PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.007G135300.1 | ||||||||
Common Name | POPTR_0007s01350g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 299aa MW: 33560.1 Da PI: 8.8151 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 107.7 | 1.4e-33 | 59 | 199 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee....vikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....tk 79 lp+G++F+Ptd el+ e+L+ kv++++++++ +i+++d i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+ t+ Potri.007G135300.1 59 LPAGVKFDPTDLELL-EHLEGKVKSDTCKVHPlideFIPTIDgengICYTHPEKLP-GVSKDGLIRHFFHRPSKAYTTGTRKRRKvhtdTE 147 799************.99*********5553333443444434445**********.555555677******************7455533 PP NAM 80 ..sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ g+++g kk+Lv+y g+++k+ekt+Wvmh+y+l Potri.007G135300.1 148 ggETRWHKTGKTRPVVV-VGKVKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 199 44667************.8999**********6657999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-37 | 52 | 218 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.208 | 59 | 218 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-15 | 60 | 199 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MTWCNDCNDV QTIERSSPPP CNASVIAQRH KECLIRSCPS CGHQMKCQDQ ARIHDLPGLP 60 AGVKFDPTDL ELLEHLEGKV KSDTCKVHPL IDEFIPTIDG ENGICYTHPE KLPGVSKDGL 120 IRHFFHRPSK AYTTGTRKRR KVHTDTEGGE TRWHKTGKTR PVVVVGKVKG YKKILVLYTN 180 YGKQRKPEKT NWVMHQYHLG NNEEEKDGEL VVSKVFYQTQ PRQCGSLIKD SVPVPSKLKV 240 QSSGHEGSNL KNSTTLVEYY NPSFISFDQS GQNRSTNPNP PQQLLPHFAL HDGSSLIP* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.007G135300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB970793 | 0.0 | AB970793.1 Populus nigra PniNAC122 mRNA for NAC transcriptional factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002309767.1 | 0.0 | NAC domain-containing protein 73 | ||||
Swissprot | O49459 | 1e-127 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | B9HGS2 | 0.0 | B9HGS2_POPTR; NAC family protein | ||||
STRING | POPTR_0007s01350.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1228 | 34 | 108 | Representative plant | OGRP525 | 15 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-117 | NAC domain containing protein 73 |
Link Out ? help Back to Top | |
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Phytozome | Potri.007G135300.1 |
Entrez Gene | 7491717 |
Publications ? help Back to Top | |||
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