PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.007G135100.1 | ||||||||
Common Name | POPTR_0007s01370g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 180aa MW: 20311.7 Da PI: 8.6952 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.7 | 9.5e-19 | 21 | 74 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + ++ ++ql+ Le+ F+ n++++ae++ eLA++lgLt rqV +W+qNrRa+ k+ Potri.007G135100.1 21 KKRLARDQLRLLETSFNANQTLKAEHKIELASQLGLTSRQVEIWYQNRRARNKN 74 456899*********************************************995 PP | |||||||
2 | HD-ZIP_I/II | 96.4 | 2.9e-31 | 20 | 111 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +k+rl+++q++lLE+sF+++++L+ e+K ela++Lgl+ rqv++W+qnrRAR k+ +E+dy+ ++ ++ ++++en+rLek+v++L+ el+ Potri.007G135100.1 20 RKKRLARDQLRLLETSFNANQTLKAEHKIELASQLGLTSRQVEIWYQNRRARNKNNAIEHDYKNVQLELGNVMTENTRLEKQVSTLKYELN 110 89*************************************************************************************9997 PP HD-ZIP_I/II 93 e 93 + Potri.007G135100.1 111 K 111 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-17 | 7 | 75 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.42E-16 | 11 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.471 | 15 | 75 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.9E-14 | 18 | 79 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.40E-13 | 20 | 75 | No hit | No description |
Pfam | PF00046 | 5.1E-16 | 20 | 73 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 2.2E-6 | 46 | 55 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 50 | 73 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.2E-6 | 55 | 71 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MNSHLHHQSQ SHGNHALKPR KKRLARDQLR LLETSFNANQ TLKAEHKIEL ASQLGLTSRQ 60 VEIWYQNRRA RNKNNAIEHD YKNVQLELGN VMTENTRLEK QVSTLKYELN KVQQMILFGS 120 TTSASALASV SGYSDEQANS TSPGNMICNW RDAGNDEIFP VEELYTCLTG SGTQLWPLS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.007G135100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002309768.1 | 1e-132 | homeobox-leucine zipper protein ATHB-52 | ||||
TrEMBL | B9HGS4 | 1e-131 | B9HGS4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s01370.1 | 1e-132 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16535 | 5 | 9 | Representative plant | OGRP16366 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 2e-22 | homeobox protein 52 |
Link Out ? help Back to Top | |
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Phytozome | Potri.007G135100.1 |
Entrez Gene | 7469569 |