PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.007G133400.2

Common Name

POPTR_0007s01530g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Nin-like

Protein Properties

Length: 980aa MW: 107281 Da PI: 4.9318

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.007G133400.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5.1e-29	589	640	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Potri.007G133400.2 589 AEKTVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 640 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.836	574	660	IPR003035	RWP-RK domain
Pfam	PF02042	3.5E-26	592	640	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.25E-20	877	962	No hit	No description
SMART	SM00666	2.2E-20	878	961	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.2E-23	878	961	No hit	No description
PROSITE profile	PS51745	20.417	878	961	IPR000270	PB1 domain
CDD	cd06407	1.36E-29	879	960	No hit	No description
Pfam	PF00564	9.8E-17	879	960	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 980 aa Download sequence Send to blast
MENSFSSKEK GMGYWASPRA QMDSVTTFDG APRNSFFEDP FNSFSELMNF DMYAGWCNNS 60 SAMDQMLAPY GTPSFPSTSY PSFDAGSFAE QNSASIQETI NAAGTSYNGG DKVMLQQTNS 120 HFGCPSDSID ADDLGAKHSN GAGQQNHFPN TTHYIMSQPV GPSLDERMLR ALSLLKVSYG 180 GGILAQVWVP IRSGDQYMLS TSEQPYLLDQ MLAGFREVSR TFTFSAEVKP GVPLGLPGRV 240 FISKVPEWTS NVRYYRKAEY LRAKHAVDHE VRGSFALPIF DPDEMSCCAV LELVTVKEKP 300 DFDSEMENVC HALEVTLCLC LTEIITFQCL SSNKRAALSE IADVLRAVCH AHRLPLALTW 360 MPCNYTEEAV DEIIKVRVKE ANSRSSGKCI LCIEGTACYV NDREMQGFVH ACAEHYIEEG 420 QGIAGKAVQS NHPFFFPDVK TYDITEYPLV HHARKYGLNA AVAIRLRSTY TGDDDYILEL 480 FLPVNIKESS DQQLLLNNLS GTMQRICKSL RTVSDTEFAG QECSEVGLPK EAVPSFQPMS 540 ISNGSSQTAL SEGNLNSAAK MPLNVCSSKN DQIESNSSNE QVEKKRSTAE KTVSLSVLQQ 600 YFSGSLKDAA KSIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLRKIQTV LDSVQGVEGG 660 LKFDPTTGGF VAGGSMNQEF DHRNGFVFQA KNLSNGNSEP ANHDVVSVLP ASCTDGNNST 720 VKVEEDECCI GSGGMLKECS VHVIDCSADS KSVAIDAGLC EQTSFGSGSW ACLEIDPPGS 780 FAKAGNIGGM KNGGIILENS DSRIVPRSSL PFVAAQEMDT KMEGDDGNVE RNQPTCSSMT 840 DSSNSSGSIM HGSISSSPSF EERKHSEEKT SFGDGDLKIT VKARYREDII RFKFDPSAAG 900 CFQLYEEVSK RFKLQTGTFQ LKYLDDEEEW VLLVSDSDLL ECLEIMEYVG TRSVKFLVRD 960 TPFAMGSSDS SSCFLTGRS*

Sequence ? help Back to Top

Protein Sequence Length: 980 aa Download sequence Send to blast

MENSFSSKEK GMGYWASPRA QMDSVTTFDG APRNSFFEDP FNSFSELMNF DMYAGWCNNS  60
SAMDQMLAPY GTPSFPSTSY PSFDAGSFAE QNSASIQETI NAAGTSYNGG DKVMLQQTNS  120
HFGCPSDSID ADDLGAKHSN GAGQQNHFPN TTHYIMSQPV GPSLDERMLR ALSLLKVSYG  180
GGILAQVWVP IRSGDQYMLS TSEQPYLLDQ MLAGFREVSR TFTFSAEVKP GVPLGLPGRV  240
FISKVPEWTS NVRYYRKAEY LRAKHAVDHE VRGSFALPIF DPDEMSCCAV LELVTVKEKP  300
DFDSEMENVC HALEVTLCLC LTEIITFQCL SSNKRAALSE IADVLRAVCH AHRLPLALTW  360
MPCNYTEEAV DEIIKVRVKE ANSRSSGKCI LCIEGTACYV NDREMQGFVH ACAEHYIEEG  420
QGIAGKAVQS NHPFFFPDVK TYDITEYPLV HHARKYGLNA AVAIRLRSTY TGDDDYILEL  480
FLPVNIKESS DQQLLLNNLS GTMQRICKSL RTVSDTEFAG QECSEVGLPK EAVPSFQPMS  540
ISNGSSQTAL SEGNLNSAAK MPLNVCSSKN DQIESNSSNE QVEKKRSTAE KTVSLSVLQQ  600
YFSGSLKDAA KSIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLRKIQTV LDSVQGVEGG  660
LKFDPTTGGF VAGGSMNQEF DHRNGFVFQA KNLSNGNSEP ANHDVVSVLP ASCTDGNNST  720
VKVEEDECCI GSGGMLKECS VHVIDCSADS KSVAIDAGLC EQTSFGSGSW ACLEIDPPGS  780
FAKAGNIGGM KNGGIILENS DSRIVPRSSL PFVAAQEMDT KMEGDDGNVE RNQPTCSSMT  840
DSSNSSGSIM HGSISSSPSF EERKHSEEKT SFGDGDLKIT VKARYREDII RFKFDPSAAG  900
CFQLYEEVSK RFKLQTGTFQ LKYLDDEEEW VLLVSDSDLL ECLEIMEYVG TRSVKFLVRD  960
TPFAMGSSDS SSCFLTGRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.007G133400.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU231638	1e-149	CU231638.1 Populus EST from mild drought-stressed leaves.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024461462.1	0.0	protein NLP9
Refseq	XP_024461463.1	0.0	protein NLP9
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A2K1ZTV0	0.0	A0A2K1ZTV0_POPTR; Uncharacterized protein
STRING	POPTR_0007s01530.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Potri.007G133400.2
Entrez Gene	7469575

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]