PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.007G133400.1

Common Name

POPTR_0007s01530g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Nin-like

Protein Properties

Length: 989aa MW: 108191 Da PI: 5.1314

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.007G133400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5.2e-29	598	649	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Potri.007G133400.1 598 AEKTVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 649 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.097	581	669	IPR003035	RWP-RK domain
Pfam	PF02042	3.6E-26	601	649	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.25E-20	886	971	No hit	No description
PROSITE profile	PS51745	20.417	887	970	IPR000270	PB1 domain
SMART	SM00666	2.2E-20	887	970	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.2E-23	887	970	No hit	No description
Pfam	PF00564	9.9E-17	888	969	IPR000270	PB1 domain
CDD	cd06407	1.12E-29	888	969	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 989 aa Download sequence Send to blast
MENSFSSKEK GMGYWASPRA QMDSVTTFDG APRNSFFEDP FNSFSELMNF DMYAGWCNNS 60 SAMDQMLAPY GTPSFPSTSY PSFDAGSFAE QNSASIQETI NAAGTSYNGG DKVMLQQTNS 120 HFGCPSDSID ADDLGAKHSN GAGQQNHFPN TTHYIMSQPV GPSLDERMLR ALSLLKVSYG 180 GGILAQVWVP IRSGDQYMLS TSEQPYLLDQ MLAGFREVSR TFTFSAEVKP GVPLGLPGRV 240 FISKVPEWTS NVRYYRKAEY LRAKHAVDHE VRGSFALPIF DPDEMSCCAV LELVTVKEKP 300 DFDSEMENVC HALEAVNLRS TAPPRLLPQC LSSNKRAALS EIADVLRAVC HAHRLPLALT 360 WMPCNYTEEA VDEIIKVRVK EANSRSSGKC ILCIEGTACY VNDREMQGFV HACAEHYIEE 420 GQGIAGKAVQ SNHPFFFPDV KTYDITEYPL VHHARKYGLN AAVAIRLRST YTGDDDYILE 480 LFLPVNIKES SDQQLLLNNL SGTMQRICKS LRTVSDTEFA GQECSEVGLP KEAVPSFQPM 540 SISNGSSQTA LSEGNLNSAA KMPLNVCSSK NDQIESNSSN EQTTSGSRRQ VEKKRSTAEK 600 TVSLSVLQQY FSGSLKDAAK SIGVCPTTLK RICRQHGISR WPSRKINKVN RSLRKIQTVL 660 DSVQGVEGGL KFDPTTGGFV AGGSMNQEFD HRNGFVFQAK NLSNGNSEPA NHDVVSVLPA 720 SCTDGNNSTV KVEEDECCIG SGGMLKECSV HVIDCSADSK SVAIDAGLCE QTSFGSGSWA 780 CLEIDPPGSF AKAGNIGGMK NGGIILENSD SRIVPRSSLP FVAAQEMDTK MEGDDGNVER 840 NQPTCSSMTD SSNSSGSIMH GSISSSPSFE ERKHSEEKTS FGDGDLKITV KARYREDIIR 900 FKFDPSAAGC FQLYEEVSKR FKLQTGTFQL KYLDDEEEWV LLVSDSDLLE CLEIMEYVGT 960 RSVKFLVRDT PFAMGSSDSS SCFLTGRS*

Sequence ? help Back to Top

Protein Sequence Length: 989 aa Download sequence Send to blast

MENSFSSKEK GMGYWASPRA QMDSVTTFDG APRNSFFEDP FNSFSELMNF DMYAGWCNNS  60
SAMDQMLAPY GTPSFPSTSY PSFDAGSFAE QNSASIQETI NAAGTSYNGG DKVMLQQTNS  120
HFGCPSDSID ADDLGAKHSN GAGQQNHFPN TTHYIMSQPV GPSLDERMLR ALSLLKVSYG  180
GGILAQVWVP IRSGDQYMLS TSEQPYLLDQ MLAGFREVSR TFTFSAEVKP GVPLGLPGRV  240
FISKVPEWTS NVRYYRKAEY LRAKHAVDHE VRGSFALPIF DPDEMSCCAV LELVTVKEKP  300
DFDSEMENVC HALEAVNLRS TAPPRLLPQC LSSNKRAALS EIADVLRAVC HAHRLPLALT  360
WMPCNYTEEA VDEIIKVRVK EANSRSSGKC ILCIEGTACY VNDREMQGFV HACAEHYIEE  420
GQGIAGKAVQ SNHPFFFPDV KTYDITEYPL VHHARKYGLN AAVAIRLRST YTGDDDYILE  480
LFLPVNIKES SDQQLLLNNL SGTMQRICKS LRTVSDTEFA GQECSEVGLP KEAVPSFQPM  540
SISNGSSQTA LSEGNLNSAA KMPLNVCSSK NDQIESNSSN EQTTSGSRRQ VEKKRSTAEK  600
TVSLSVLQQY FSGSLKDAAK SIGVCPTTLK RICRQHGISR WPSRKINKVN RSLRKIQTVL  660
DSVQGVEGGL KFDPTTGGFV AGGSMNQEFD HRNGFVFQAK NLSNGNSEPA NHDVVSVLPA  720
SCTDGNNSTV KVEEDECCIG SGGMLKECSV HVIDCSADSK SVAIDAGLCE QTSFGSGSWA  780
CLEIDPPGSF AKAGNIGGMK NGGIILENSD SRIVPRSSLP FVAAQEMDTK MEGDDGNVER  840
NQPTCSSMTD SSNSSGSIMH GSISSSPSFE ERKHSEEKTS FGDGDLKITV KARYREDIIR  900
FKFDPSAAGC FQLYEEVSKR FKLQTGTFQL KYLDDEEEWV LLVSDSDLLE CLEIMEYVGT  960
RSVKFLVRDT PFAMGSSDSS SCFLTGRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.007G133400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU231638	1e-167	CU231638.1 Populus EST from mild drought-stressed leaves.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024461462.1	0.0	protein NLP9
Refseq	XP_024461463.1	0.0	protein NLP9
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A2K1ZTV0	0.0	A0A2K1ZTV0_POPTR; Uncharacterized protein
STRING	POPTR_0007s01530.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3464	34	65
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Potri.007G133400.1
Entrez Gene	7469575

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]