PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G130800.1
Common NamePOPTR_0007s01760g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 409aa    MW: 44711.4 Da    PI: 6.3969
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G130800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1301.1e-09224282563
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         kr++r   NR +A rs +RK  +i+eLe+k+++L++e ++L  +l  l+    +l++e+
  Potri.007G130800.1 224 KRAKRIWANRQSAARSKERKMRYIAELERKMQTLQTEATSLSAQLTLLQRDTNSLTAEN 282
                         9***************************************************9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.0E-14220284IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.875222285IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.9E-10224279No hitNo description
SuperFamilySSF579592.74E-10224276No hitNo description
PfamPF001704.0E-8224282IPR004827Basic-leucine zipper domain
CDDcd147032.20E-24225274No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MDKDKSPGNH SSGLPPPSGR YSCFSPSGSS YSLKPEQSPS TFPPKAPGSS SDPSHFGHGL  60
DSNRFSHDIS RMSDNPPKNL GHRRAHSEIL TLPDDISFDS DLGVVGGGTD GTTFSDETEE  120
DYLSMYLDMD KFSSSSATSA FQVGESSAPP VPAQPLAPLP ATMDLGAGPS ERPKVRHQHS  180
LSMDGSTTIK PEMLMSGSEE ASHADSKKSI SAAKLAELAL IDPKRAKRIW ANRQSAARSK  240
ERKMRYIAEL ERKMQTLQTE ATSLSAQLTL LQRDTNSLTA ENSELKLRLQ TMEQQVHLQD  300
ALNDALKEEI QHLKVLTGQV PNYASFGGGQ QLYPNNQAMH TFLAAQQFQQ LQIHSQKQQQ  360
QQFQLHQLQQ QQLQQQQQQG GDLQMRGSMA SSSQKDNSSE DNSSSSKD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.27810.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively at a low level in young seedlings and in roots, stems and leaves of mature plants.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G130800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024461539.10.0probable transcription factor PosF21
SwissprotQ040881e-157POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A2K1ZTP50.0A0A2K1ZTP5_POPTR; Uncharacterized protein
STRINGPOPTR_0007s01760.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55173249
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.11e-136bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]