PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.007G129000.1 | ||||||||
Common Name | POPTR_0007s01920g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | FAR1 | ||||||||
Protein Properties | Length: 144aa MW: 16343.7 Da PI: 8.4789 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 90.4 | 2.5e-28 | 48 | 136 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYAk+ GF +r+ +s+ks+++g+i++r++ C+keg++ +++k+ + + r+r+ +r gC a++ vk+ek gkw+vtk+ eHnH+l+ Potri.007G129000.1 48 FYDEYAKQEGFLTRIVSSRKSEHDGTIISRRLACNKEGFNLSSQKTGQVKIRKRERKREGCMAMILVKREKLGKWVVTKFTREHNHPLV 136 9*********************************************999**************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.9E-26 | 48 | 136 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MEIETLVEDK IVTTESIVGG ETGVCEVDTS QEPYEGMVFE SENAARVFYD EYAKQEGFLT 60 RIVSSRKSEH DGTIISRRLA CNKEGFNLSS QKTGQVKIRK RERKREGCMA MILVKREKLG 120 KWVVTKFTRE HNHPLVISSK KVD* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.007G129000.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003632074.2 | 7e-82 | PREDICTED: protein FAR1-RELATED SEQUENCE 5 | ||||
Swissprot | Q9SZL8 | 4e-22 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2K1ZTL2 | 1e-100 | A0A2K1ZTL2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s01920.1 | 4e-99 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF965 | 31 | 104 | Representative plant | OGRP3376 | 7 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 2e-40 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.007G129000.1 |
Entrez Gene | 18100846 |
Publications ? help Back to Top | |||
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