PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.007G119400.1 | ||||||||
Common Name | POPTR_0007s02840g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 113aa MW: 12803.7 Da PI: 8.7062 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35.2 | 2.2e-11 | 13 | 97 | 9 | 89 |
HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS..SE CS B3 9 dvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr..se 89 ks+ lv p ++++ +g e+ + +d++gr+We+kl+ r++++ v+++ W ++v+++gL ++D+++++++ + ++ Potri.007G119400.1 13 TDIKSC-LVYPTANLRAFqmvQG--ENAIRFNARDPTGRVWEFKLCTRNHGRYkkPVIRGDWLDYVREKGLTVNDSIILTMVADaeNG 97 445566.7778888888864433..3556788899**********98777665779************************87554344 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.0E-10 | 5 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-10 | 7 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.73E-12 | 8 | 104 | No hit | No description |
Pfam | PF02362 | 1.5E-8 | 15 | 96 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.713 | 43 | 108 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 113 aa Download sequence Send to blast |
MEIELVNKKL TTTDIKSCLV YPTANLRAFQ MVQGENAIRF NARDPTGRVW EFKLCTRNHG 60 RYKKPVIRGD WLDYVREKGL TVNDSIILTM VADAENGGSY NIRVEPNTEL AI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.007G119400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011003253.1 | 6e-64 | PREDICTED: uncharacterized protein LOC105110050 | ||||
TrEMBL | B9HE55 | 4e-78 | B9HE55_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s02840.1 | 6e-79 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14473 | 3 | 13 |
Link Out ? help Back to Top | |
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Phytozome | Potri.007G119400.1 |
Entrez Gene | 7486052 |