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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Potri.007G119000.1 |
| Common Name | POPTR_0007s02880g |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family |
GRAS |
| Protein Properties |
Length: 450aa MW: 50082.8 Da PI: 4.9856 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.007G119000.1 | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 283.4 | 6.5e-87 | 45 | 442 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92
++lLl+cA a++++d +laq++++ l++ as gdp+qRl++ f++AL +r ++ +++ ++ +s+ +++n+s + +++++ P+++
Potri.007G119000.1 45 EKLLLHCASALEHNDGTLAQQVMWVLNNVASLVGDPNQRLTSWFLRALISRASKVCPTAMNFDGSSTIRRRNMSVTEL--AVYVDLIPWHR 133
689***************************************************999999877777777666554433..469******** PP
GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnv 180
f++ + N+aIl+a+eg ++vHi+Df+i++++QWp+L++aLa RpegppslRiT+ + ++ + + ee+g rL++fA+ +vpfefnv
Potri.007G119000.1 134 FGFCASNSAILKAIEGYSKVHILDFSITHCMQWPTLIDALAIRPEGPPSLRITVPSCRPPVppfLNVSCEEVGLRLSNFAKYRDVPFEFNV 224
*****************************************************97775555668999************************ PP
GRAS 181 l......................vakrledleleeLrvkpgEalaVnlvlqlhrllde....svsleserdevLklvkslsPkvvvvveqe 245
+ ++ l+ l++ +L+++ +Eal++n++ l +l de sv+ +s rd++L +vk+ +P +vvvv+++
Potri.007G119000.1 225 FdhdpssfasseimsqesshdfhFESLLNHLTPAMLDLRDDEALVINCQNWLRYLSDEekgnSVQDSSLRDAFLCTVKGFNPCIVVVVDED 315
************999888877755557788899999*******************98722214455569********************** PP
GRAS 246 adhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336
+d++++s+ r++ ++++ + fd+le+ l ++s++ri +E +g +i+n+++ ega+r+er e+ k +r+++aGF++vp+ e++ +
Potri.007G119000.1 316 SDLSAPSLSSRITTCFNFLWIPFDALETFLLKDSSQRIEYESD-IGHKIENIISFEGAQRIERLESGIKLAQRMKNAGFSSVPFCEDTIGE 405
*******************************************.*********************************************** PP
GRAS 337 aklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
+++ll++++ ++g++ ee++ lvl+Wk+++ v+ +aW
Potri.007G119000.1 406 VRSLLEEHAgGWGMKR-EEDHMLVLTWKGHNSVFSTAW 442
*********6776654.5678999************** PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 450 aa
Download sequence Send
to blast |
MKTELRGNSN TSISLQNPSL FNNPQSSVSG ALNGCLGSLD GACIEKLLLH CASALEHNDG 60
TLAQQVMWVL NNVASLVGDP NQRLTSWFLR ALISRASKVC PTAMNFDGSS TIRRRNMSVT 120
ELAVYVDLIP WHRFGFCASN SAILKAIEGY SKVHILDFSI THCMQWPTLI DALAIRPEGP 180
PSLRITVPSC RPPVPPFLNV SCEEVGLRLS NFAKYRDVPF EFNVFDHDPS SFASSEIMSQ 240
ESSHDFHFES LLNHLTPAML DLRDDEALVI NCQNWLRYLS DEEKGNSVQD SSLRDAFLCT 300
VKGFNPCIVV VVDEDSDLSA PSLSSRITTC FNFLWIPFDA LETFLLKDSS QRIEYESDIG 360
HKIENIISFE GAQRIERLES GIKLAQRMKN AGFSSVPFCE DTIGEVRSLL EEHAGGWGMK 420
REEDHMLVLT WKGHNSVFST AWVPNGLQE*
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