PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G115200.6
Common NamePOPTR_0007s03260g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 238aa    MW: 26848.2 Da    PI: 9.6294
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G115200.6genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.23.9e-272575151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        k+i+n+  rqvtfskRr g++KKA+ELS+LCdae+a+++fs tgkl+eys+
  Potri.007G115200.6 25 KKIDNTAARQVTFSKRRRGLFKKAYELSTLCDAEIALMVFSATGKLFEYSN 75
                        68***********************************************95 PP
2K-box43.41.4e-151131872599
               K-box  25 kkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                          kei +  re+Rh+ GedL+ L+l+eLq+Le+ +e sl++  + K   ++++i+ l+ k ++l een++L+++++
  Potri.007G115200.6 113 IKEIAKKNRELRHMRGEDLQGLDLEELQKLEKIMEGSLRRLVEEKGGKIINEIDALKTKGEQLIEENQRLKQQVM 187
                         5666666799**************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-381776IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.4781777IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-291890IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-271939IPR002100Transcription factor, MADS-box
CDDcd002651.12E-371984No hitNo description
PfamPF003196.5E-252673IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-273954IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-275475IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.968102192IPR002487Transcription factor, K-box
PfamPF014864.2E-13111186IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MKGLLWGELK FFYLVKMTRK KIQIKKIDNT AARQVTFSKR RRGLFKKAYE LSTLCDAEIA  60
LMVFSATGKL FEYSNSSMGQ VIERRNLHPK NINTLDQPSL EKQLDGGVHA MLIKEIAKKN  120
RELRHMRGED LQGLDLEELQ KLEKIMEGSL RRLVEEKGGK IINEIDALKT KGEQLIEENQ  180
RLKQQVMSLL AGQGHLLEPG QSSDSLVTNI SSMGSVDPRQ DCDSSCAFLK LGLPFPD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-201782166MEF2C
5f28_B3e-201782166MEF2C
5f28_C3e-201782166MEF2C
5f28_D3e-201782166MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G115200.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006380343.11e-174MADS-box protein JOINTLESS isoform X1
SwissprotQ9FUY61e-74JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLU5G4111e-173U5G411_POPTR; Uncharacterized protein
STRINGcassava4.1_015454m7e-97(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-61MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]