PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G115200.5
Common NamePOPTR_0007s03260g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 220aa    MW: 24707.6 Da    PI: 9.4922
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G115200.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.43.4e-27959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        k+i+n+  rqvtfskRr g++KKA+ELS+LCdae+a+++fs tgkl+eys+
  Potri.007G115200.5  9 KKIDNTAARQVTFSKRRRGLFKKAYELSTLCDAEIALMVFSATGKLFEYSN 59
                        68***********************************************95 PP
2K-box356.1e-13981692699
               K-box  26 keienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                         kei +  re+Rh+ GedL+ L+l+eLq+Le+ +e sl++  + K   ++++i+ l+ k  +l een++L+++++
  Potri.007G115200.5  98 KEIAKKNRELRHMRGEDLQGLDLEELQKLEKIMEGSLRRLVEEKGGKIINEIDALKTK--QLIEENQRLKQQVM 169
                         666666799*********************************************9876..68999999*99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.478161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-29274IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002651.03E-37368No hitNo description
PfamPF003195.7E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.81186174IPR002487Transcription factor, K-box
PfamPF014861.9E-1095168IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MTRKKIQIKK IDNTAARQVT FSKRRRGLFK KAYELSTLCD AEIALMVFSA TGKLFEYSNS  60
SMGQVIERRN LHPKNINTLD QPSLEKQLDG GVHAMLIKEI AKKNRELRHM RGEDLQGLDL  120
EELQKLEKIM EGSLRRLVEE KGGKIINEID ALKTKQLIEE NQRLKQQVMS LLAGQGHLLE  180
PGQSSDSLVT NISSMGSVDP RQDCDSSCAF LKLGLPFPD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-20166166MEF2C
5f28_B2e-20166166MEF2C
5f28_C2e-20166166MEF2C
5f28_D2e-20166166MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G115200.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310488.11e-158MADS-box protein JOINTLESS isoform X2
SwissprotQ9FUY62e-72JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLB9HEB81e-156B9HEB8_POPTR; Uncharacterized protein
STRINGcassava4.1_015454m2e-94(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.13e-59MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]