PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G115200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 259aa    MW: 29070.6 Da    PI: 8.966
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G115200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF854.4e-27959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        k+i+n+  rqvtfskRr g++KKA+ELS+LCdae+a+++fs tgkl+eys+
  Potri.007G115200.1  9 KKIDNTAARQVTFSKRRRGLFKKAYELSTLCDAEIALMVFSATGKLFEYSN 59
                        68***********************************************95 PP

2K-box43.21.7e-15971712599
               K-box  25 kkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                          kei +  re+Rh+ GedL+ L+l+eLq+Le+ +e sl++  + K   ++++i+ l+ k ++l een++L+++++
  Potri.007G115200.1  97 IKEIAKKNRELRHMRGEDLQGLDLEELQKLEKIMEGSLRRLVEEKGGKIINEIDALKTKGEQLIEENQRLKQQVM 171
                         5666666799**************************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.478161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-29274IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002651.20E-37368No hitNo description
PRINTSPR004045.7E-27323IPR002100Transcription factor, MADS-box
PfamPF003197.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.96886176IPR002487Transcription factor, K-box
PfamPF014864.4E-1395170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MTRKKIQIKK IDNTAARQVT FSKRRRGLFK KAYELSTLCD AEIALMVFSA TGKLFEYSNS  60
SMGQVIERRN LHPKNINTLD QPSLEKQLDG GVHAMLIKEI AKKNRELRHM RGEDLQGLDL  120
EELQKLEKIM EGSLRRLVEE KGGKIINEID ALKTKGEQLI EENQRLKQQV MSLLAGQGHL  180
LEPGQSSDSL VTNISSMGSV DPRQDCDSSC AFLKLGLACY THSHANKVLP TIIMVLISDS  240
VNFYITQLQN SCRLPFPD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-20166166MEF2C
5f28_B5e-20166166MEF2C
5f28_C5e-20166166MEF2C
5f28_D5e-20166166MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G115200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310488.11e-156MADS-box protein JOINTLESS isoform X2
SwissprotQ9FUY65e-75JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLB9HEB81e-155B9HEB8_POPTR; Uncharacterized protein
STRINGcassava4.1_015454m4e-93(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89033106
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.15e-59MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]