PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G115000.5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 236aa    MW: 26676.6 Da    PI: 8.3191
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G115000.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.75.4e-27959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        k+i++++ rqvtfskRr g++KKA+ELS+LCdae+a+++fs +gklyeys+
  Potri.007G115000.5  9 KKIDDTIARQVTFSKRRGGLFKKAYELSTLCDAEIALMVFSASGKLYEYSN 59
                        689**********************************************95 PP

2K-box43.91e-15931712199
               K-box  21 lakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                         +a L+kei +  re+ ++ GedL+ L+l+eL++Le+ +e+sl ++ + K   ++++i++l++  ++l een++Lr++++
  Potri.007G115000.5  93 YATLNKEIAEKTRELSQVRGEDLQGLNLEELHKLEKLIETSLCRVVEEKGGKIINEINTLKNEGEQLVEENRRLRQQVM 171
                         688999999999****************************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.688161IPR002100Transcription factor, MADS-box
SMARTSM004324.1E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.19E-28270IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002651.25E-37368No hitNo description
PRINTSPR004048.4E-27323IPR002100Transcription factor, MADS-box
PfamPF003199.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.92486176IPR002487Transcription factor, K-box
PfamPF014864.9E-1393170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MTRRKIQIKK IDDTIARQVT FSKRRGGLFK KAYELSTLCD AEIALMVFSA SGKLYEYSNS  60
SMGQVIEKRN LHPKNIDMFG QPSLELQPDG AVYATLNKEI AEKTRELSQV RGEDLQGLNL  120
EELHKLEKLI ETSLCRVVEE KGGKIINEIN TLKNEGEQLV EENRRLRQQV MNLSAGQRHL  180
LEPDKSSDSL VTNTRSMSSV DPFLTLGLAC YTHFHANIFC FHSLVLTNII YGTKQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-20168168MEF2 CHIMERA
6byy_B7e-20168168MEF2 CHIMERA
6byy_C7e-20168168MEF2 CHIMERA
6byy_D7e-20168168MEF2 CHIMERA
6bz1_A7e-20168168MEF2 CHIMERA
6bz1_B7e-20168168MEF2 CHIMERA
6bz1_C7e-20168168MEF2 CHIMERA
6bz1_D7e-20168168MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G115000.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024461633.11e-175MADS-box protein JOINTLESS isoform X1
RefseqXP_024461634.11e-175MADS-box protein JOINTLESS isoform X1
RefseqXP_024461635.11e-175MADS-box protein JOINTLESS isoform X1
SwissprotQ9FUY69e-70JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A2K1ZSY81e-173A0A2K1ZSY8_POPTR; Uncharacterized protein
STRINGPOPTR_0007s03300.11e-101(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.14e-58MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]