PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G109100.2
Common NamePOPTR_0007s03840g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 407aa    MW: 44723.4 Da    PI: 4.5536
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G109100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1546.8e-4871351129
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lppGfrFhPtd elv++yLk+kv gkk+++ ++i+e++i+k+ PwdLp k ++++++ +wyfF++++kkya+g rk+rat+ gyWk+tgkd
  Potri.007G109100.2   7 LPPGFRFHPTDVELVKYYLKRKVLGKKFHF-QAIAEIEINKYAPWDLPnKsCLRTRDLKWYFFCPTEKKYASGVRKKRATDIGYWKTTGKD 96 
                         79***************************9.89**************95347777888********************************* PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                         ++v   k+e+vg+ ktLvf+ g+ p+ge+tdWvm eyrle
  Potri.007G109100.2  97 RSVQY-KNEVVGMIKTLVFHIGKPPRGERTDWVMYEYRLE 135
                         ****9.8999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.68E-575157IPR003441NAC domain
PROSITE profilePS5100553.1217157IPR003441NAC domain
PfamPF023651.4E-258134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MGRNSSLPPG FRFHPTDVEL VKYYLKRKVL GKKFHFQAIA EIEINKYAPW DLPNKSCLRT  60
RDLKWYFFCP TEKKYASGVR KKRATDIGYW KTTGKDRSVQ YKNEVVGMIK TLVFHIGKPP  120
RGERTDWVMY EYRLEEKELA DKGIAQDEYV LCQIFKKDGP GPKNGAQYGA PFNEDEWDDG  180
DDEVEKEVNA QPAILPALMD APAFMLPNNP NMTIATSSCV PESMCTGPLI SCPSQAPSTA  240
CTTLPRVSND DVASTKALQF VHGGVNGGEA DSFAGMSAPA FQQPCNPNSS ILASSSSYVP  300
ENTCSAYIPS VGATQVEAPQ IVDDNDDILS MLAVFYNDNP ESADFGGIAK PETDIFQNLG  360
DLPTLEGGGD SIPISQYFMD PTLPGSGADF LELMDLETPL YHSWGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-45616316171NO APICAL MERISTEM PROTEIN
1ut4_B4e-45616316171NO APICAL MERISTEM PROTEIN
1ut7_A4e-45616316171NO APICAL MERISTEM PROTEIN
1ut7_B4e-45616316171NO APICAL MERISTEM PROTEIN
3swm_A5e-45616319174NAC domain-containing protein 19
3swm_B5e-45616319174NAC domain-containing protein 19
3swm_C5e-45616319174NAC domain-containing protein 19
3swm_D5e-45616319174NAC domain-containing protein 19
3swp_A5e-45616319174NAC domain-containing protein 19
3swp_B5e-45616319174NAC domain-containing protein 19
3swp_C5e-45616319174NAC domain-containing protein 19
3swp_D5e-45616319174NAC domain-containing protein 19
4dul_A4e-45616316171NAC domain-containing protein 19
4dul_B4e-45616316171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the epidermal cells of the root apical region. {ECO:0000269|PubMed:20388856}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00583DAPTransfer from AT5G64060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G109100.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310505.10.0NAC domain-containing protein 82 isoform X1
SwissprotQ9FY827e-88NAC82_ARATH; NAC domain-containing protein 82
TrEMBLB9HEK00.0B9HEK0_POPTR; NAC family protein
STRINGPOPTR_0007s03840.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.42e-85NAC domain containing protein 82
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]