PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.007G109100.1 | ||||||||
Common Name | POPTR_0007s03840g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 432aa MW: 47252.2 Da PI: 4.4639 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 153.8 | 7.6e-48 | 7 | 135 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtd elv++yLk+kv gkk+++ ++i+e++i+k+ PwdLp k ++++++ +wyfF++++kkya+g rk+rat+ gyWk+tgkd Potri.007G109100.1 7 LPPGFRFHPTDVELVKYYLKRKVLGKKFHF-QAIAEIEINKYAPWDLPnKsCLRTRDLKWYFFCPTEKKYASGVRKKRATDIGYWKTTGKD 96 79***************************9.89**************95347777888********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++v k+e+vg+ ktLvf+ g+ p+ge+tdWvm eyrle Potri.007G109100.1 97 RSVQY-KNEVVGMIKTLVFHIGKPPRGERTDWVMYEYRLE 135 ****9.8999****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.1E-56 | 5 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.121 | 7 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-25 | 8 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MGRNSSLPPG FRFHPTDVEL VKYYLKRKVL GKKFHFQAIA EIEINKYAPW DLPNKSCLRT 60 RDLKWYFFCP TEKKYASGVR KKRATDIGYW KTTGKDRSVQ YKNEVVGMIK TLVFHIGKPP 120 RGERTDWVMY EYRLEEKELA DKGIAQDEYV LCQIFKKDGP GPKNGAQYGA PFNEDEWDDG 180 DDEVEKEVNA QPAILPALMD APAFMLPNNP NMTIATSSCV PESMCTGPLI SCPSQAPSTA 240 CTTLPRVSND DVASTKALQF VHGGVNGGEA DSFAGMSAPA FQQPCNPNSS ILASSSSYVP 300 ENTCSAYIPS VGATQVEAPQ IVDDNDDILS MLAVFYNDNP ESADFGGIAK PETDIFQNLG 360 DLPTLEGGGD SIPISQYFMD PTLPGSADFG GIAKPGTDIF QNLGDLPTLE GGADFLELMD 420 LETPLYHSWG K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-45 | 6 | 163 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-45 | 6 | 163 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-45 | 6 | 163 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-45 | 6 | 163 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-45 | 6 | 163 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 9e-45 | 6 | 163 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 9e-45 | 6 | 163 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 9e-45 | 6 | 163 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 9e-45 | 6 | 163 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 9e-45 | 6 | 163 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 9e-45 | 6 | 163 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 9e-45 | 6 | 163 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 7e-45 | 6 | 163 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 7e-45 | 6 | 163 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the epidermal cells of the root apical region. {ECO:0000269|PubMed:20388856}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00583 | DAP | Transfer from AT5G64060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.007G109100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002310505.1 | 0.0 | NAC domain-containing protein 82 isoform X1 | ||||
Swissprot | Q9FY82 | 2e-87 | NAC82_ARATH; NAC domain-containing protein 82 | ||||
TrEMBL | B9HEK0 | 0.0 | B9HEK0_POPTR; NAC family protein | ||||
STRING | POPTR_0007s03840.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3302 | 34 | 65 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09330.4 | 4e-85 | NAC domain containing protein 82 |
Link Out ? help Back to Top | |
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Phytozome | Potri.007G109100.1 |
Entrez Gene | 7485068 |
Publications ? help Back to Top | |||
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