PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.007G106100.2 | ||||||||
Common Name | POPTR_0007s04140g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 261aa MW: 30026.3 Da PI: 9.7029 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.7 | 5.4e-18 | 19 | 64 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v q+G+ +W+ Ia++++ gR++k+c++rw++ Potri.007G106100.2 19 RGHWRPAEDEKLRQLVDQYGPQNWNFIAEHLQ-GRSGKSCRLRWYNQ 64 899*****************************.************96 PP | |||||||
2 | Myb_DNA-binding | 58 | 2.2e-18 | 72 | 115 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T++E+e+l++a++ +G++ W++I+r ++ gRt++ +k++++ + Potri.007G106100.2 72 RPFTEDEEERLLKAHQIHGNR-WASISRLFP-GRTDNAVKNHYHVV 115 69*******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.008 | 14 | 69 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.61E-29 | 17 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-15 | 18 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-27 | 20 | 72 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 1.3E-17 | 22 | 82 | No hit | No description |
CDD | cd00167 | 3.15E-14 | 22 | 63 | No hit | No description |
SMART | SM00717 | 9.8E-16 | 70 | 118 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.58 | 70 | 120 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.9E-21 | 73 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.45E-12 | 73 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 261 aa Download sequence Send to blast |
MEDLKGSSSS DDGKTSCHRG HWRPAEDEKL RQLVDQYGPQ NWNFIAEHLQ GRSGKSCRLR 60 WYNQLDPNIN KRPFTEDEEE RLLKAHQIHG NRWASISRLF PGRTDNAVKN HYHVVMARRK 120 RERCLTFHGK RNNFQVQYST DHHLRSNRNS STPPGSNFGF FRPQVSLDYG SKLGFQNNII 180 ERKGTNIPMT SSNSSPSWTN VSASTITNDS LSFDVFDAKR KDYIQYSSSN SSLHPKERPL 240 ALNESLHCTY HPKCCWTADP * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-34 | 19 | 119 | 7 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.007G106100.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB970783 | 0.0 | AB970783.1 Populus tremula x Populus tremuloides PtxtMYB026 mRNA for MYB transcriptional factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002309913.3 | 0.0 | transcriptional activator Myb | ||||
TrEMBL | A0A2I4KKT8 | 0.0 | A0A2I4KKT8_POPTR; MYB family protein | ||||
TrEMBL | A0A2K1ZSG0 | 0.0 | A0A2K1ZSG0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s04140.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G33450.1 | 2e-67 | myb domain protein 69 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.007G106100.2 |
Entrez Gene | 7466738 |