PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G106100.1
Common NamePOPTR_0007s04140g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 349aa    MW: 39682.9 Da    PI: 9.5072
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G106100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.4e-181964147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        rg W + Ede+l ++v q+G+ +W+ Ia++++ gR++k+c++rw++ 
  Potri.007G106100.1 19 RGHWRPAEDEKLRQLVDQYGPQNWNFIAEHLQ-GRSGKSCRLRWYNQ 64
                        899*****************************.************96 PP
2Myb_DNA-binding57.43.4e-1872115247
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          ++T++E+e+l++a++ +G++ W++I+r ++ gRt++ +k++++ +
  Potri.007G106100.1  72 RPFTEDEEERLLKAHQIHGNR-WASISRLFP-GRTDNAVKNHYHVV 115
                         69*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.0081469IPR017930Myb domain
SuperFamilySSF466892.92E-2917112IPR009057Homeodomain-like
SMARTSM007171.7E-151867IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-272072IPR009057Homeodomain-like
CDDcd001672.90E-142263No hitNo description
PfamPF139212.0E-172282No hitNo description
SMARTSM007179.8E-1670118IPR001005SANT/Myb domain
PROSITE profilePS5129420.5870120IPR017930Myb domain
CDDcd001674.09E-1273116No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2073118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEDLKGSSSS DDGKTSCHRG HWRPAEDEKL RQLVDQYGPQ NWNFIAEHLQ GRSGKSCRLR  60
WYNQLDPNIN KRPFTEDEEE RLLKAHQIHG NRWASISRLF PGRTDNAVKN HYHVVMARRK  120
RERCLTFHGK RNNFQVQYST DHHLRSNRNS STPPGSNFGF FRPQVSLDYG SKLGFQNNII  180
ERKGTNIPMT SSNSSPSWTN VSASTITNDS LSFDVFDAKR KDYIQYSSSN SSLHPKERPL  240
ALNESLHCTY HPSSTIYNNY QNVVGQQIPN AKKVDPNNPF ALTSYGDGYG SNKEKITESQ  300
LVRLNSNNHE PAALWKLPMA SQQEEKDHGG QLKNQDVAFI DFLGVGIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-32191197107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G106100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707830.0AB970783.1 Populus tremula x Populus tremuloides PtxtMYB026 mRNA for MYB transcriptional factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309913.30.0transcriptional activator Myb
TrEMBLA0A2K1ZSG00.0A0A2K1ZSG0_POPTR; Uncharacterized protein
STRINGPOPTR_0007s04140.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.14e-67myb domain protein 69