PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.007G099400.1 | ||||||||
Common Name | POPTR_0007s04780g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 305aa MW: 34990.5 Da PI: 6.7946 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.2 | 2e-50 | 12 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lp+GfrFhPtd+elv++yL kk+ g+++++ +i+e+d+yk++Pw+Lp+++ +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk+ Potri.007G099400.1 12 LPAGFRFHPTDDELVNHYLLKKCGGQSISA-PIIAEIDLYKYDPWQLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKP 101 799*************************99.88***************7666789************************************ PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + + g+kk Lvfy g+apkg kt+W+mheyrl Potri.007G099400.1 102 IGR--PKPLGIKKALVFYAGKAPKGIKTNWIMHEYRL 136 *98..789***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.93E-61 | 5 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.973 | 12 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-26 | 13 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MKGNRSADQL ELPAGFRFHP TDDELVNHYL LKKCGGQSIS APIIAEIDLY KYDPWQLPEM 60 ALYGEKEWYF FSPRDRKYPN GSRPNRAAGT GYWKATGADK PIGRPKPLGI KKALVFYAGK 120 APKGIKTNWI MHEYRLANVD RTAGKKNNLR LDDWVLCRIY NKKGSVEKHF PAERKSIAKY 180 PEMEEQKPNI SEMSGYHNGM SQIAAPTMMM SNSNDFLYMD TSDSIPRLNT DSSSSEHVLS 240 PEVTCEKEVQ SQPKWNDQLD NAFDFNFNYI DDGFQDYPFA SQDQFQLDQL SPLQDMFMYL 300 QKPF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-81 | 1 | 168 | 3 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.585 | 0.0 | bud| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.007G099400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU223784 | 0.0 | CU223784.1 Populus EST from leave. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002309945.1 | 0.0 | NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 1e-127 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | B9HF58 | 0.0 | B9HF58_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s04780.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1258 | 34 | 108 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-129 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.007G099400.1 |
Entrez Gene | 7466772 |