PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.007G099100.1 | ||||||||
Common Name | POPTR_0007s04810g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 151aa MW: 16889.8 Da PI: 10.5702 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.7 | 7.6e-12 | 28 | 113 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld 85 f k+lt+ dv k+ +++p + + + +g + l +ede+g++W++++++rk++ v+++ W F+++++L gD + F++ Potri.007G099100.1 28 FSKELTKTDVRKR--MSIPTNKLPHLpqfQGA-CHAVVLEVEDERGQVWNMRCSIRKRKYLkPVISSSWVAFARSKNLGIGDKIFFYRG 113 7788988888876..8*****99555987444.3567999*************77444433499**********************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.9E-19 | 19 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.02E-13 | 23 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.06E-16 | 28 | 112 | No hit | No description |
Pfam | PF02362 | 2.9E-9 | 28 | 118 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0018 | 28 | 133 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
METKNPCRLN LLLKIAPEMA SRSEILVFSK ELTKTDVRKR MSIPTNKLPH LPQFQGACHA 60 VVLEVEDERG QVWNMRCSIR KRKYLKPVIS SSWVAFARSK NLGIGDKIFF YRGLNDEDGP 120 SGVKYKIKVQ KATKVFGAIV GYGSPVHAAI * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.007G099100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011023087.1 | 1e-105 | PREDICTED: uncharacterized protein LOC105124679 | ||||
TrEMBL | A0A3N7GJH0 | 2e-93 | A0A3N7GJH0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s04810.1 | 1e-108 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2060 | 7 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01500.1 | 2e-08 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.007G099100.1 |
Entrez Gene | 7490186 |