PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G097600.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 306aa    MW: 34132.5 Da    PI: 8.0456
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G097600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-1289140155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h  +Er+RR+++N+ ++ +r++lP++   + ++ + a+i+  A++++k+L+
  Potri.007G097600.1  89 QRMTHINVERNRRKQMNEYLAVIRSMLPPS---YVQRADQASIVGGAINFVKELE 140
                         79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-1588152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.58988139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-1288144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.44E-1188144No hitNo description
PfamPF000107.5E-1089140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-994145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MTLEPFKVFV LSLSDLEGEK ANYHETLDTT ISIESDFHSN SNWNINNSSS QEINCACNGG  60
LFTGGNAAGG RRKRRRRRSI KDEAEVAHQR MTHINVERNR RKQMNEYLAV IRSMLPPSYV  120
QRADQASIVG GAINFVKELE KLLQSLEAHK QIKKVISATG SDFSSPFSDF FTFPQYSTAS  180
SRNKHSNNSS SSTESIFADQ KRDQKRSIAI ADVEVTMIES HANLKIQSRK HPKQLLKMVT  240
GLHSLGLHIL HLNVTTVDQM ALYSFSVKVE DECKLTSVDE IAAAVHEMVG RIQEDATSNC  300
MPSVE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17077RRKRRRRR
27175RKRRR
37177RKRRRRR
47178RKRRRRRS
57277KRRRRR
689100RMTHINVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G097600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164471e-108AC216447.1 Populus trichocarpa clone ACSB1045-A16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309955.30.0transcription factor bHLH96
SwissprotQ9C7T41e-67BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A3N7G1Z31e-156A0A3N7G1Z3_POPTR; Uncharacterized protein
STRINGPOPTR_0007s04950.11e-177(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-53bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]