PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.007G090600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 372aa MW: 41335.1 Da PI: 6.1293 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.4 | 5.5e-21 | 172 | 222 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+ge Potri.007G090600.1 172 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 222 59******9.**********965...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.04E-34 | 171 | 231 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.7E-32 | 172 | 230 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-23 | 172 | 230 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.4E-38 | 172 | 235 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.235 | 172 | 229 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-11 | 173 | 184 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-14 | 173 | 222 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-11 | 195 | 211 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MAAAIDIYNT TVPVFSDPCR GELMEALEPF MKSASPSPAS TSYSSQSPST SSYSFSSYPS 60 CYHNNCFPVT SHPNLDLNFY TPTSTQMFSN GFSGYEQTGP IGLNHLTPSQ ILQIQAKIHL 120 QQQQQQQQQQ QMANHAPTSQ LVHNQRTSNF LAPKPVPMKQ QSASPPPKPT KLYRGVRQRH 180 WGKWVAEIRL PKNRTRLWLG TFDTAEEAAL AYDKAAYKLR GEFARLNFPH LRHQGAHVSG 240 EFGDYKPLHS SVDAKLQAIC QSLGLQKQGE TGEPCSVSDS KKTVSAPLQV KIEDDCSLQG 300 ELKREFENLG VEEFKVEIPS PSPALSDESL AGSSSPESEI SFFFSDSLQW DEFENFGLEK 360 YPSVEIDWSS I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-22 | 171 | 229 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.10519 | 0.0 | bud| leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269|PubMed:9192694}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.007G090600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF147217 | 0.0 | EF147217.1 Populus trichocarpa clone WS01229_H04 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002310574.3 | 0.0 | ethylene-responsive transcription factor RAP2-4 | ||||
Swissprot | Q8H1E4 | 1e-82 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A2K1ZRK0 | 0.0 | A0A2K1ZRK0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s05690.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 1e-65 | related to AP2 4 |
Link Out ? help Back to Top | |
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Phytozome | Potri.007G090600.1 |
Publications ? help Back to Top | |||
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