PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.007G079800.2 | ||||||||
Common Name | POPTR_0007s06720g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 191aa MW: 21673.8 Da PI: 6.9305 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.4 | 3.3e-29 | 100 | 158 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDg++WrKYG+K+vk+s++pr+YY+C+s gC+vkk+ver++ed ++v + Y g Hnhe Potri.007G079800.2 100 MDDGFKWRKYGKKSVKNSPNPRNYYKCSSGGCNVKKRVERDREDSRYVLTSYDGVHNHE 158 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.5E-31 | 86 | 160 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.53E-26 | 92 | 160 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.917 | 95 | 160 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.8E-32 | 100 | 159 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.5E-22 | 101 | 158 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MEYYPQNPKP SYNYSYINEG LDPWAIEFQP SDYLMLDDGF GEDDSSSQNM VSPEQVASGS 60 STGYSGATSR NNSMQNGVKK NKTEVEHRVA FRTKSELEIM DDGFKWRKYG KKSVKNSPNP 120 RNYYKCSSGG CNVKKRVERD REDSRYVLTS YDGVHNHESP CMVYYNNQMP LMASNAWTLQ 180 PSSLHSSSFS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-24 | 88 | 160 | 2 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.007G079800.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ377436 | 0.0 | GQ377436.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024461002.1 | 1e-131 | probable WRKY transcription factor 51 | ||||
TrEMBL | A0A2K1ZR01 | 1e-130 | A0A2K1ZR01_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s06720.1 | 1e-139 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64810.1 | 9e-44 | WRKY DNA-binding protein 51 |
Link Out ? help Back to Top | |
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Phytozome | Potri.007G079800.2 |
Entrez Gene | 7457138 |