PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.007G079800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 193aa MW: 21887.2 Da PI: 7.9329 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.4 | 3.4e-29 | 102 | 160 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDg++WrKYG+K+vk+s++pr+YY+C+s gC+vkk+ver++ed ++v + Y g Hnhe Potri.007G079800.1 102 MDDGFKWRKYGKKSVKNSPNPRNYYKCSSGGCNVKKRVERDREDSRYVLTSYDGVHNHE 160 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.6E-31 | 88 | 162 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.66E-26 | 94 | 162 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.917 | 97 | 162 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.8E-32 | 102 | 161 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.6E-22 | 103 | 160 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MEYYPQNPKP SYNYSYINEG LDPWAIEFQP SDYLMLDDGF GEDDSSSQNM VSPEQVASGS 60 STGYSGATSR NNSIKCKNGV KKNKTEVEHR VAFRTKSELE IMDDGFKWRK YGKKSVKNSP 120 NPRNYYKCSS GGCNVKKRVE RDREDSRYVL TSYDGVHNHE SPCMVYYNNQ MPLMASNAWT 180 LQPSSLHSSS FS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-24 | 90 | 162 | 2 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.007G079800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ377436 | 0.0 | GQ377436.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024461002.1 | 1e-143 | probable WRKY transcription factor 51 | ||||
TrEMBL | A0A2K1ZR01 | 1e-141 | A0A2K1ZR01_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s06720.1 | 1e-129 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1120 | 34 | 110 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64810.1 | 2e-43 | WRKY DNA-binding protein 51 |
Link Out ? help Back to Top | |
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Phytozome | Potri.007G079800.1 |