PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.007G076800.1 | ||||||||
Common Name | POPTR_0007s07090g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 323aa MW: 34945.5 Da PI: 7.2373 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.8 | 4.1e-21 | 124 | 173 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp ++ +r++lg+f+t+e Aa+a+++a+++++g Potri.007G076800.1 124 KYRGVRQRP-WGKWAAEIRDP----IKaARVWLGTFDTPEAAARAYDEAALRFRG 173 8********.**********7....357************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.2E-33 | 123 | 182 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.28E-23 | 124 | 182 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.0E-39 | 124 | 187 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.9E-15 | 124 | 173 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.38E-24 | 124 | 183 | No hit | No description |
PROSITE profile | PS51032 | 25.607 | 124 | 181 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-11 | 125 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-11 | 147 | 163 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MLPDSSRERE MSIMVTALTR VVAGNVPADD SDSSTAFSNN QGDCIHGGLS AKREREEEGG 60 CSEENERLCR AFGDGFLHGD DSSAGRATGI SVVTTSTVTP ASTQMTFTPV YEHNETRRDE 120 PQRKYRGVRQ RPWGKWAAEI RDPIKAARVW LGTFDTPEAA ARAYDEAALR FRGSKAKLNF 180 PENVKLRPSP PPSPTANQLT VSDSPSSGLL SLSTSSELLL HSQALHHTQN REISREQVSQ 240 PQLILGVGGY QKQPVSLYDQ MFLSSSFVSS NSSSSSTKSS GRMLFPAQKP GEFRPATSSQ 300 SSGNDCQLPA WSGYSHHTSS SG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-23 | 123 | 184 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.007G076800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002310625.2 | 0.0 | ethylene-responsive transcription factor ABR1 | ||||
TrEMBL | B9HGC6 | 0.0 | B9HGC6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s07090.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4933 | 32 | 54 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33710.1 | 7e-28 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.007G076800.1 |
Entrez Gene | 7456286 |