PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.007G070900.2

Common Name

POPTR_0007s07830g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NF-YC

Protein Properties

Length: 259aa MW: 29010.9 Da PI: 5.8696

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.007G070900.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	177.1	1.8e-55	82	186	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 ql++fw+ q ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+ Potri.007G070900.2 82 QLQMFWTIQmqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDV 172 89**99877789************************************************************************* PP NF-YC 89 fdflvdivprdelk 102 fdflvdi+prdelk Potri.007G070900.2 173 FDFLVDIIPRDELK 186 *********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.1E-34	61	176	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.8E-37	96	168	IPR009072	Histone-fold
Pfam	PF00808	2.2E-21	104	167	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MDQSQQTRQQ QSQQQPVVAG AGQMAYASTP YQTAPMVASG TPSIAIPSPT QSPATFSNSP 60 HQLTYQQAQH FHHQQQQQQQ QQLQMFWTIQ MQEIEQTTDF KNHSLPLARI KKIMKADEDV 120 RMISAEAPVI FAKACEMFIL ELTLRSWIHT EENKRRTLQK NDIAAAISRT DVFDFLVDII 180 PRDELKEEGL GVTKATIPVG PPADLPYYYV PQHPVGPPGM IMGKPVDQAA AYEAQQPQPP 240 VALMPWLQTQ PQQQQSDP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	4e-59	90	182	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	160	RRTLQKN

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:11250072, ECO:0000269\|PubMed:9662544}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.007G070900.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC214598	0.0	AC214598.1 Populus trichocarpa clone POP052-F04, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002310081.2	0.0	nuclear transcription factor Y subunit C-2
Refseq	XP_024460707.1	0.0	nuclear transcription factor Y subunit C-2
Swissprot	Q8LCG7	1e-79	NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBL	B9HGM5	0.0	B9HGM5_POPTR; NF-YC family protein
STRING	POPTR_0007s07830.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	2e-79	nuclear factor Y, subunit C2

Link Out ? help Back to Top
Phytozome	Potri.007G070900.2
Entrez Gene	7471426

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li S, et al. HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis. Plant Cell, 2014. 26(4): p. 1764-1780 [PMID:24728648] Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Baud S, et al. Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed. Plant Physiol., 2016. 171(2): p. 1099-112 [PMID:27208266] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]