PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G067600.1
Common NamePOPTR_0007s08190g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 368aa    MW: 41250.6 Da    PI: 6.0758
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G067600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.2e-161663148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+W++ Ed++l+  ++++G ++W++ ++  g+ R++k+c++rw +yl
  Potri.007G067600.1 16 RGPWSPAEDLRLIAFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYL 63
                        89******************************99************97 PP
2Myb_DNA-binding50.16.2e-1669114148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++++ E++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
  Potri.007G067600.1  69 RGNFSEVEEDTIIKLHQTLGNK-WSKIASHLP-GRTDNEIKNVWNTHL 114
                         89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-23766IPR009057Homeodomain-like
PROSITE profilePS5129414.8791163IPR017930Myb domain
SuperFamilySSF466893.88E-2914110IPR009057Homeodomain-like
SMARTSM007179.0E-131565IPR001005SANT/Myb domain
PfamPF002498.1E-151663IPR001005SANT/Myb domain
CDDcd001674.00E-91863No hitNo description
PROSITE profilePS5129423.81264118IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2667118IPR009057Homeodomain-like
SMARTSM007171.1E-1468116IPR001005SANT/Myb domain
PfamPF002495.8E-1569114IPR001005SANT/Myb domain
CDDcd001671.23E-971114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MGKGRAPCCD KSQVKRGPWS PAEDLRLIAF IQKHGHENWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDVKRG NFSEVEEDTI IKLHQTLGNK WSKIASHLPG RTDNEIKNVW NTHLKKKLAC  120
KDDGEHSEGD ESKGSSSTSS SSSSSSTIMS SGKRALEMEL DEQKNQGFST QKPRILENEE  180
DSSPRGVSNN QFKPAMKPNE LSSSSFSSNN SSITNSSQAD VSEPDGEKTG SFFNFRGRYN  240
VRNSLEEVNK PEEIVTEIPF ESDYDFWNML DSLSSFQTSG IQLQNVEAGQ SSRFGDAYNM  300
GEVENKKWLR YLENELGLDA TKDENQNLSK NAAESTIVPE NFQHDMPLKP AEVHPGTVEN  360
FHLWPSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-251611858159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-251611858159MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-25161184105C-Myb DNA-Binding Domain
1msf_C3e-25161184105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G067600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707920.0AB970792.1 Populus tremula x Populus tremuloides PtxtMYB192 mRNA for MYB transcriptional factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310679.10.0transcription factor MYB58
TrEMBLB9HGV50.0B9HGV5_POPTR; Uncharacterized protein
STRINGPOPTR_0007s08190.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100293042
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.12e-74myb domain protein 58