PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.007G065400.2 | ||||||||
Common Name | POPTR_0007s08420g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 303aa MW: 34327.9 Da PI: 7.469 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.5 | 8.9e-52 | 11 | 135 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhP+deelv++yL kk+++ + + evd++k+ePwd+p+++ + kewyf+s+rd+kyatg r+nrat+sgyWkatgkd++ Potri.007G065400.2 11 LPPGFRFHPRDEELVCDYLMKKASHCDSL---LMIEVDLNKCEPWDIPETACVGGKEWYFYSQRDRKYATGLRTNRATASGYWKATGKDRH 98 79********************9998844...4889************7777799************************************ PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +l+ kg+lvg++ktLvfy+grapkg+ktdWvmhe+rle Potri.007G065400.2 99 ILR-KGTLVGMRKTLVFYQGRAPKGKKTDWVMHEFRLE 135 **9.999****************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-60 | 2 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.362 | 11 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.4E-27 | 12 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MSNISFVEAK LPPGFRFHPR DEELVCDYLM KKASHCDSLL MIEVDLNKCE PWDIPETACV 60 GGKEWYFYSQ RDRKYATGLR TNRATASGYW KATGKDRHIL RKGTLVGMRK TLVFYQGRAP 120 KGKKTDWVMH EFRLEGPLGQ PKTSSEKEDW VLCRVFYKNT REVVAKPSIR SCYDDTGSSS 180 LPALMDSYIT FDQTQPNLDE HEQVPCFSIF SQIQTNQNFP YITQMEVPNL PTKGTGPFGQ 240 VPMNITTHSD AFSCDTKVLK AVLNHFNMME SNANIKGSPS LGEGSSESYL SDVGMPNLWN 300 HY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-52 | 6 | 160 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-52 | 6 | 160 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-52 | 6 | 160 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-52 | 6 | 160 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-52 | 6 | 160 | 15 | 170 | NAC domain-containing protein 19 |
3swm_B | 3e-52 | 6 | 160 | 15 | 170 | NAC domain-containing protein 19 |
3swm_C | 3e-52 | 6 | 160 | 15 | 170 | NAC domain-containing protein 19 |
3swm_D | 3e-52 | 6 | 160 | 15 | 170 | NAC domain-containing protein 19 |
3swp_A | 3e-52 | 6 | 160 | 15 | 170 | NAC domain-containing protein 19 |
3swp_B | 3e-52 | 6 | 160 | 15 | 170 | NAC domain-containing protein 19 |
3swp_C | 3e-52 | 6 | 160 | 15 | 170 | NAC domain-containing protein 19 |
3swp_D | 3e-52 | 6 | 160 | 15 | 170 | NAC domain-containing protein 19 |
4dul_A | 3e-52 | 6 | 160 | 12 | 167 | NAC domain-containing protein 19 |
4dul_B | 3e-52 | 6 | 160 | 12 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.007G065400.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX534240 | 0.0 | JX534240.1 Populus tremula x Populus alba NAC1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002310688.1 | 0.0 | NAC domain-containing protein 21/22 isoform X2 | ||||
Swissprot | Q84TE6 | 1e-123 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | B9HH13 | 0.0 | B9HH13_POPTR; Uncharacterized protein | ||||
STRING | GLYMA15G40510.1 | 1e-167 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 1e-117 | NAC domain containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Potri.007G065400.2 |
Entrez Gene | 7483078 |