PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.007G065400.1 | ||||||||
Common Name | POPTR_0007s08420g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 306aa MW: 34655.3 Da PI: 7.176 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.8 | 3.1e-51 | 11 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhP+deelv++yL kk+++ + + evd++k+ePwd+p v++ + kewyf+s+rd+kyatg r+nrat+sgyWkatgk Potri.007G065400.1 11 LPPGFRFHPRDEELVCDYLMKKASHCDSL---LMIEVDLNKCEPWDIPDLVETacvGGKEWYFYSQRDRKYATGLRTNRATASGYWKATGK 98 79********************9998844...4889***********963333344889******************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 d+++l+ kg+lvg++ktLvfy+grapkg+ktdWvmhe+rle Potri.007G065400.1 99 DRHILR-KGTLVGMRKTLVFYQGRAPKGKKTDWVMHEFRLE 138 *****9.999****************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-59 | 2 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.524 | 11 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.4E-27 | 12 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MSNISFVEAK LPPGFRFHPR DEELVCDYLM KKASHCDSLL MIEVDLNKCE PWDIPDLVET 60 ACVGGKEWYF YSQRDRKYAT GLRTNRATAS GYWKATGKDR HILRKGTLVG MRKTLVFYQG 120 RAPKGKKTDW VMHEFRLEGP LGQPKTSSEK EDWVLCRVFY KNTREVVAKP SIRSCYDDTG 180 SSSLPALMDS YITFDQTQPN LDEHEQVPCF SIFSQIQTNQ NFPYITQMEV PNLPTKGTGP 240 FGQVPMNITT HSDAFSCDTK VLKAVLNHFN MMESNANIKG SPSLGEGSSE SYLSDVGMPN 300 LWNHY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-50 | 6 | 163 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-50 | 6 | 163 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-50 | 6 | 163 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-50 | 6 | 163 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-50 | 6 | 163 | 15 | 170 | NAC domain-containing protein 19 |
3swm_B | 2e-50 | 6 | 163 | 15 | 170 | NAC domain-containing protein 19 |
3swm_C | 2e-50 | 6 | 163 | 15 | 170 | NAC domain-containing protein 19 |
3swm_D | 2e-50 | 6 | 163 | 15 | 170 | NAC domain-containing protein 19 |
3swp_A | 2e-50 | 6 | 163 | 15 | 170 | NAC domain-containing protein 19 |
3swp_B | 2e-50 | 6 | 163 | 15 | 170 | NAC domain-containing protein 19 |
3swp_C | 2e-50 | 6 | 163 | 15 | 170 | NAC domain-containing protein 19 |
3swp_D | 2e-50 | 6 | 163 | 15 | 170 | NAC domain-containing protein 19 |
4dul_A | 2e-50 | 6 | 163 | 12 | 167 | NAC domain-containing protein 19 |
4dul_B | 2e-50 | 6 | 163 | 12 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.007G065400.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX534240 | 0.0 | JX534240.1 Populus tremula x Populus alba NAC1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024460774.1 | 0.0 | NAC domain-containing protein 21/22 isoform X1 | ||||
Swissprot | Q84TE6 | 1e-120 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A2K1ZQ98 | 0.0 | A0A2K1ZQ98_POPTR; Uncharacterized protein | ||||
STRING | GLYMA15G40510.1 | 1e-166 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10010 | 32 | 41 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 1e-115 | NAC domain containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Potri.007G065400.1 |
Entrez Gene | 7483078 |