PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G064600.1
Common NamePOPTR_0007s08530g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 162aa    MW: 18469.6 Da    PI: 9.0243
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G064600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.7e-081358144
                        TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                        r +WT eE +l+ +a++++ +g    +++I+++++  +tlkq  +++
  Potri.007G064600.1 13 RVKWTLEENKLFENAIAEFDPGspdFFEKISERIP-EKTLKQTEDHF 58
                        789*****************99*************.9****987776 PP

2Myb_DNA-binding47.44.4e-15104148347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT eE+el++++ k++G+g+W++I+r    +Rt+ q+ s+ qky
  Potri.007G064600.1 104 PWTGEEHELFLNGLKKYGKGDWRSISRNCVVTRTPSQVASHAQKY 148
                         8***************************999*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-4660IPR009057Homeodomain-like
PROSITE profilePS500905.854862IPR017877Myb-like domain
SMARTSM007173.0E-61264IPR001005SANT/Myb domain
PfamPF002494.4E-61358IPR001005SANT/Myb domain
SuperFamilySSF466898.61E-81570IPR009057Homeodomain-like
CDDcd001672.40E-51558No hitNo description
Gene3DG3DSA:1.10.10.603.0E-1296149IPR009057Homeodomain-like
PROSITE profilePS5129420.16597153IPR017930Myb domain
SuperFamilySSF466892.58E-1798154IPR009057Homeodomain-like
TIGRFAMsTIGR015577.3E-18100151IPR006447Myb domain, plants
SMARTSM007174.8E-11101151IPR001005SANT/Myb domain
PfamPF002493.7E-12104148IPR001005SANT/Myb domain
CDDcd001678.43E-11104149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MNSSSSSSPN RERVKWTLEE NKLFENAIAE FDPGSPDFFE KISERIPEKT LKQTEDHFLI  60
LIEDVEKIES GLTPLPDYGT TSRGDKGKGS NSNDKPKQRK KGVPWTGEEH ELFLNGLKKY  120
GKGDWRSISR NCVVTRTPSQ VASHAQKYFL RLQNSSNTEH KQ
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G064600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2091000.0AC209100.1 Populus trichocarpa clone POP042-C19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310693.21e-118transcription factor DIVARICATA
SwissprotQ8S9H74e-47DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2K1ZQ831e-116A0A2K1ZQ83_POPTR; Uncharacterized protein (Fragment)
STRINGPOPTR_0007s08530.11e-117(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1862266
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-45MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]