PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G062000.1
Common NamePOPTR_0007s08920g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 218aa    MW: 22664.7 Da    PI: 8.5026
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G062000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.3e-05142163223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         +C+ Cg++F ++     H+r H
  Potri.007G062000.1 142 TCSECGRTFASWKAVFGHMRAH 163
                         6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.452141163IPR007087Zinc finger, C2H2
PfamPF139121.6E-5143165IPR007087Zinc finger, C2H2
PROSITE patternPS000280143163IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MTNNDNKDAA ATTNKGNGQP QQSNSPRRNR NNQEEAVTLP IPRGSTLETC ESPSVFGPTR  60
PTGTEVGASA TAVTPTGGST PPTPVRIGWS GAGVDSSVAA AAAGASGEAN RKRSGKAAEE  120
GSSPVPRRGK REMDINPDTE PTCSECGRTF ASWKAVFGHM RAHPDRGWRG AIPPPEWSPE  180
NPDDQQGDRS ERIAKPISAN AAKYGAGNSR KDEAGSM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G062000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2105480.0AC210548.1 Populus trichocarpa clone POP006-N01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306426.13e-71uncharacterized protein LOC7492122
TrEMBLB9N7K71e-154B9N7K7_POPTR; Uncharacterized protein
STRINGPOPTR_0007s08920.11e-155(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102022128
Representative plantOGRP1129035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35700.12e-14C2H2 family protein