PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.007G058200.1 | ||||||||
Common Name | POPTR_0007s09520g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Dof | ||||||||
Protein Properties | Length: 345aa MW: 37080.9 Da PI: 8.0908 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.6 | 6.6e-39 | 32 | 92 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC+s ntkfCyynnysl+qPr+fCk+CrryWtkGGalr vP+Ggg+rknkk + Potri.007G058200.1 32 QEQALKCPRCESPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRSVPIGGGCRKNKKIK 92 5799******************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-24 | 33 | 86 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.5E-33 | 34 | 90 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.984 | 36 | 90 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 38 | 74 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MVPPDNLQEK QTSKEDNQSS SSSRKTATTR PQEQALKCPR CESPNTKFCY YNNYSLTQPR 60 HFCKTCRRYW TKGGALRSVP IGGGCRKNKK IKSSSRLSSD SKDSSGSSEI AGFSFFHGLS 120 PAVDFNLGGL SFPRLNPSQN GLYNHFPSFG DISATSAAAA TVTSPSFTLD PSVSSTGSCS 180 LMGFNYPLTS VASGFCGAIQ ENIGGASMNI NTNLPSSIES LSCINQDLHW KLQQQRLAML 240 FGTGENHKDG STVSTDPIEN QVQKPQPIMF ENLEISKPQV CAAGNSRKEG AASGDTATEW 300 FFGNSYSQVT ATPTNTSNNG NNDNTGNWNG VQAWGDLHQY SALP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.007G058200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006380583.2 | 0.0 | dof zinc finger protein DOF5.7 | ||||
TrEMBL | A0A2K1ZPY2 | 0.0 | A0A2K1ZPY2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s19310.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3854 | 34 | 60 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65590.1 | 5e-60 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.007G058200.1 |
Entrez Gene | 18101078 |