PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.007G058200.1

Common Name

POPTR_0007s09520g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Dof

Protein Properties

Length: 345aa MW: 37080.9 Da PI: 8.0908

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.007G058200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.6	6.6e-39	32	92	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC+s ntkfCyynnysl+qPr+fCk+CrryWtkGGalr vP+Ggg+rknkk + Potri.007G058200.1 32 QEQALKCPRCESPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRSVPIGGGCRKNKKIK 92 5799******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-24	33	86	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.5E-33	34	90	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.984	36	90	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	38	74	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MVPPDNLQEK QTSKEDNQSS SSSRKTATTR PQEQALKCPR CESPNTKFCY YNNYSLTQPR 60 HFCKTCRRYW TKGGALRSVP IGGGCRKNKK IKSSSRLSSD SKDSSGSSEI AGFSFFHGLS 120 PAVDFNLGGL SFPRLNPSQN GLYNHFPSFG DISATSAAAA TVTSPSFTLD PSVSSTGSCS 180 LMGFNYPLTS VASGFCGAIQ ENIGGASMNI NTNLPSSIES LSCINQDLHW KLQQQRLAML 240 FGTGENHKDG STVSTDPIEN QVQKPQPIMF ENLEISKPQV CAAGNSRKEG AASGDTATEW 300 FFGNSYSQVT ATPTNTSNNG NNDNTGNWNG VQAWGDLHQY SALP*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MVPPDNLQEK QTSKEDNQSS SSSRKTATTR PQEQALKCPR CESPNTKFCY YNNYSLTQPR  60
HFCKTCRRYW TKGGALRSVP IGGGCRKNKK IKSSSRLSSD SKDSSGSSEI AGFSFFHGLS  120
PAVDFNLGGL SFPRLNPSQN GLYNHFPSFG DISATSAAAA TVTSPSFTLD PSVSSTGSCS  180
LMGFNYPLTS VASGFCGAIQ ENIGGASMNI NTNLPSSIES LSCINQDLHW KLQQQRLAML  240
FGTGENHKDG STVSTDPIEN QVQKPQPIMF ENLEISKPQV CAAGNSRKEG AASGDTATEW  300
FFGNSYSQVT ATPTNTSNNG NNDNTGNWNG VQAWGDLHQY SALP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.007G058200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006380583.2	0.0	dof zinc finger protein DOF5.7
TrEMBL	A0A2K1ZPY2	0.0	A0A2K1ZPY2_POPTR; Uncharacterized protein
STRING	POPTR_0005s19310.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3854	34	60
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	5e-60	Dof family protein

Link Out ? help Back to Top
Phytozome	Potri.007G058200.1
Entrez Gene	18101078