PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G050400.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 162aa    MW: 19010.2 Da    PI: 9.9679
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G050400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF793.4e-251055247
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                        +ien +nr++tf+kR+ g+ KKA+ELS+LCd+e+aviifs+ gkl 
  Potri.007G050400.1 10 KIENRTNRHITFAKRKSGLVKKAHELSTLCDVEIAVIIFSPAGKLI 55
                        69******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.151161IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-31160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.85E-27283IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-23323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.5E-241055IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-232338IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-233859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MGRVKLQLRK IENRTNRHIT FAKRKSGLVK KAHELSTLCD VEIAVIIFSP AGKLILFDAK  60
KRPEEIIESY LNLSEKQRGR YEISFQVFNL GDKLRNLLEL QEIENEILLC NFESENIERQ  120
IRDKTLHGLL VMLERKRNMI IYFFHSPFKH SFQLLSPINI D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-16180179Myocyte-specific enhancer factor 2B
1tqe_Q3e-16180179Myocyte-specific enhancer factor 2B
1tqe_R3e-16180179Myocyte-specific enhancer factor 2B
1tqe_S3e-16180179Myocyte-specific enhancer factor 2B
6byy_A4e-16180179MEF2 CHIMERA
6byy_B4e-16180179MEF2 CHIMERA
6byy_C4e-16180179MEF2 CHIMERA
6byy_D4e-16180179MEF2 CHIMERA
6c9l_A3e-16180179Myocyte-specific enhancer factor 2B
6c9l_B3e-16180179Myocyte-specific enhancer factor 2B
6c9l_C3e-16180179Myocyte-specific enhancer factor 2B
6c9l_D3e-16180179Myocyte-specific enhancer factor 2B
6c9l_E3e-16180179Myocyte-specific enhancer factor 2B
6c9l_F3e-16180179Myocyte-specific enhancer factor 2B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G050400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006380673.29e-49MADS-box transcription factor 18
TrEMBLA0A2K1ZPJ41e-112A0A2K1ZPJ4_POPTR; Uncharacterized protein
STRINGGorai.007G219600.13e-36(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77950.25e-28AGAMOUS-like 67