PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G048900.1
Common NamePOPTR_0007s10490g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 331aa    MW: 35750.9 Da    PI: 8.4602
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G048900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.48.9e-201257147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        +g+W++eEde l ++v+++G ++W++I++ ++ gR++k+c++rw + 
  Potri.007G048900.1 12 KGPWSPEEDEALQKLVQKHGARNWSLISKSIP-GRSGKSCRLRWCNQ 57
                        79******************************.***********985 PP
2Myb_DNA-binding50.35.4e-1666108347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         ++T++Ed+ +++a++++G++ W+tIar +  gRt++ +k++w++ 
  Potri.007G048900.1  66 PFTPDEDDTIIRAHARFGNK-WATIARLLY-GRTDNAIKNHWNST 108
                         89******************.********9.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.057762IPR017930Myb domain
SuperFamilySSF466891.24E-329105IPR009057Homeodomain-like
SMARTSM007171.4E-171160IPR001005SANT/Myb domain
PfamPF002493.1E-191257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-261365IPR009057Homeodomain-like
CDDcd001677.27E-171456No hitNo description
SMARTSM007179.1E-1363111IPR001005SANT/Myb domain
PROSITE profilePS5129419.864113IPR017930Myb domain
CDDcd001672.15E-1066109No hitNo description
Gene3DG3DSA:1.10.10.601.0E-2266112IPR009057Homeodomain-like
PfamPF002491.1E-1366108IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MAITRKEMDR IKGPWSPEED EALQKLVQKH GARNWSLISK SIPGRSGKSC RLRWCNQLSP  60
QVEHRPFTPD EDDTIIRAHA RFGNKWATIA RLLYGRTDNA IKNHWNSTLK RKCSSMAEDG  120
NFCNREGYDG NLDGDNTQPL KRSVSAGSGV PVSTGLYMSP GSPSGSDVSD SSLPGLSSSY  180
NYNIYRPVAR TGAVMPPVET TSSSDNNNDP PTSLSLSLPG ADSSEVSNQV GEPSQLPKSN  240
TVTPLLTGRN APAQEVSPAV GGLSGSVGFN TEFMSVMQEM IRKEVRNYMM EHSGVGGGMC  300
YQGMSGEGFR NVAVNNRVGL VKLSSEKWTG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-39111123104MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-39111123104C-Myb DNA-Binding Domain
1msf_C2e-39111123104C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.45490.0bud
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G048900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2030760.0AC203076.1 Populus trichocarpa clone Pop1-41F08, complete sequence.
GenBankAC2105080.0AC210508.1 Populus trichocarpa clone POP049-N18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310702.10.0transcription factor MYB44
SwissprotO231601e-107MYB73_ARATH; Transcription factor MYB73
TrEMBLB9HH800.0B9HH80_POPTR; MYB family protein
STRINGPOPTR_0007s10490.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-91myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]