PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G047400.2
Common NamePOPTR_0007s10670g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 335aa    MW: 36716.6 Da    PI: 10.1305
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G047400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.52.1e-31263320359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYeg+Hnh+
  Potri.007G047400.2 263 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPSMLVVTYEGDHNHT 320
                         99************************988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.9E-18214259IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.808.0E-33249320IPR003657WRKY domain
PROSITE profilePS5081130.756256322IPR003657WRKY domain
SuperFamilySSF1182909.68E-27259320IPR003657WRKY domain
SMARTSM007742.0E-37261321IPR003657WRKY domain
PfamPF031067.0E-27263319IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAVELVMGYR NDGFAITSKM EENAVQEAAS GLESVNKLIR LLSQKNQQNL HQSSTSTSRT  60
SMDMEIDCKA VADAAVSKFK KVISLLGRNR TGHARFRRAP VSTPPINQRQ ELSYQVPEAN  120
TKVYYATPIQ QIPPPVLNQN HYPILVPKNG VMERKDSATT TINFSYSSAG NSFVSSLTGD  180
TDSKQPSSSS AFQFTNVSQV SSAGKPPLST SSLKRKCSSE NLDSAGKCGS PGRCHCSKKR  240
KMRLKRVVRV PAISLKMSDI PPDDYSWRKY GQKPIKGSPH PRGYYKCSSV RGCPARKHVE  300
RALDDPSMLV VTYEGDHNHT ISVAETSNLI LESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-202593211576Probable WRKY transcription factor 4
2lex_A1e-202593211576Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.780.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G047400.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1482100.0EF148210.1 Populus trichocarpa clone WS0128_M02 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006380693.10.0probable WRKY transcription factor 7 isoform X2
SwissprotQ9STX01e-95WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA9PII70.0A9PII7_POPTR; Uncharacterized protein
STRINGPOPTR_0007s10670.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.12e-87WRKY DNA-binding protein 7
Publications ? help Back to Top
  1. Ralph SG, et al.
    Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding.
    BMC Genomics, 2008. 9: p. 57
    [PMID:18230180]