PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G047400.1
Common NamePOPTR_0007s10670g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 336aa    MW: 36803.7 Da    PI: 10.1305
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G047400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.52.1e-31264321359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYeg+Hnh+
  Potri.007G047400.1 264 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPSMLVVTYEGDHNHT 321
                         99************************988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105337.3E-17214260IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.808.1E-33250321IPR003657WRKY domain
PROSITE profilePS5081130.756257323IPR003657WRKY domain
SuperFamilySSF1182909.68E-27260321IPR003657WRKY domain
SMARTSM007742.0E-37262322IPR003657WRKY domain
PfamPF031067.1E-27264320IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MAVELVMGYR NDGFAITSKM EENAVQEAAS GLESVNKLIR LLSQKNQQNL HQSSTSTSRT  60
SMDMEIDCKA VADAAVSKFK KVISLLGRNR TGHARFRRAP VSTPPINQRQ ELSYQVPEAN  120
TKVYYATPIQ QIPPPVLNQN HYPILVPKNG VMERKDSATT TINFSYSSAG NSFVSSLTGD  180
TDSKQPSSSS AFQFTNVSQV SSAGKPPLST SSLKRKCSSE NLDSAGKCGS PGRCHCSKKS  240
RKMRLKRVVR VPAISLKMSD IPPDDYSWRK YGQKPIKGSP HPRGYYKCSS VRGCPARKHV  300
ERALDDPSML VVTYEGDHNH TISVAETSNL ILESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-202603221576Probable WRKY transcription factor 4
2lex_A1e-202603221576Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.780.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G047400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1482100.0EF148210.1 Populus trichocarpa clone WS0128_M02 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310122.10.0probable WRKY transcription factor 7 isoform X1
SwissprotQ9STX07e-94WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLB9HH880.0B9HH88_POPTR; Uncharacterized protein
STRINGPOPTR_0007s10670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Representative plantOGRP8844615
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-95WRKY DNA-binding protein 7