PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G046500.1
Common NamePOPTR_0007s10750g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 182aa    MW: 20323.4 Da    PI: 8.51
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G046500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-172271255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Potri.007G046500.1 22 QYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVFYLRG 71
                        69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.1E-302180IPR001471AP2/ERF domain
CDDcd000181.05E-252281No hitNo description
PfamPF008477.4E-112271IPR001471AP2/ERF domain
SMARTSM003804.1E-382285IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-212279IPR016177DNA-binding domain
PROSITE profilePS5103222.1552279IPR001471AP2/ERF domain
PRINTSPR003673.1E-112334IPR001471AP2/ERF domain
PRINTSPR003673.1E-116181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MESGVDKDMA TRKRGGMESE RQYKGIRMRK WGKWVAEIRE PNKRSRIWLG SYSTPVAAAR  60
AYDTAVFYLR GPSARLNFPE VLAAEGFGGG GSCGDMSAAS IRKRATEVGA HVDAIETALN  120
HHHHHHHHLH HDDRQRNSNN SSSSNDNNET VVDSRELKPR PVDLNKVPDP EDSDGDEWKR  180
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-142179463ATERF1
3gcc_A2e-142179463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.29830.0stem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G046500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1452030.0EF145203.1 Populus trichocarpa clone WS01121_L01 unknown mRNA.
GenBankEF1559470.0EF155947.1 Populus trichocarpa RAP2-like protein (RAP2L6) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310127.21e-133ethylene-responsive transcription factor RAP2-10
SwissprotQ9FH946e-57ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLB9HH961e-131B9HH96_POPTR; ERF family protein
STRINGPOPTR_0007s10750.11e-132(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.11e-47DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]