PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.007G038100.2

Common Name

POPTR_0007s11620g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Dof

Protein Properties

Length: 324aa MW: 34169 Da PI: 8.8379

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.007G038100.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125	2.3e-39	62	121	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk++s Potri.007G038100.2 62 QENLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNTS 121 7889*****************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-25	62	118	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-32	63	119	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.544	65	119	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	67	103	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MIQELLGGAG LIGGERKIPI NATILEGTPS PSPSLSPSPS PSSSTTSAAT TSATNSTPSS 60 AQENLRCPRC DSSNTKFCYY NNYNLTQPRH FCKTCRRYWT KGGALRNVPI GGGCRKNKNT 120 SVSASVGKSG TNKMKTMASD IGRSGFGNGF EHELSSSPIM WASPQNSHIL ALLRATQNPN 180 PSTLSNSIFV KEEGGLIGNQ FISEPGVGTA ALNARTLGLD PISQVPSLGL CSPFWKSNQH 240 QQNGFTVGEA QNSGIQELYQ RLRSSTNYYT DNPSAIVLSN VATSSSTSTS TILESAPVAG 300 GELGYWNPAF SWSDLPTTNG AYP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.13123	0.0	stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.007G038100.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF144749	0.0	EF144749.1 Populus trichocarpa clone WS01117_M16 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002310753.1	0.0	dof zinc finger protein DOF1.1 isoform X1
TrEMBL	A9P9B5	0.0	A9P9B5_POPTR; Uncharacterized protein
STRING	POPTR_0007s11620.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	4e-34	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	Potri.007G038100.2
Entrez Gene	7483138

Publications ? help Back to Top
Ralph SG, et al. Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. BMC Genomics, 2008. 9: p. 57 [PMID:18230180]