PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.007G035700.1 | ||||||||
Common Name | POPTR_0007s11870g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 228aa MW: 25698.6 Da PI: 5.9205 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.1 | 1.2e-16 | 26 | 111 | 7 | 98 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 sd +k++ + +p++f+++hg++ sk +++ +s +W+v++ k+++++ ++kGW+ F ++ gDf+vF+++++s f +v ++ Potri.007G035700.1 26 LSDIMKNQKIAIPRRFLRKHGES--LSKSAVIKVPSAATWKVEF--LKHKDEVSFAKGWEMFIAYYSIDYGDFLVFEHEWNSLF--TVFII 110 48999***************966..8999***************..**********************************9888..66555 PP - CS B3 98 r 98 + Potri.007G035700.1 111 D 111 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.84E-20 | 14 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.5E-22 | 14 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.492 | 20 | 113 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.74E-16 | 20 | 111 | No hit | No description |
SMART | SM01019 | 2.0E-9 | 21 | 113 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-13 | 26 | 111 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MASCSKRDNN GSLFTPKKTH FIRIILSDIM KNQKIAIPRR FLRKHGESLS KSAVIKVPSA 60 ATWKVEFLKH KDEVSFAKGW EMFIAYYSID YGDFLVFEHE WNSLFTVFII DKSFTEVGYP 120 WNNTDAAESN QEDKLEDHED DDDDDASVEF IDISSGSQET GKGTKGKEKL GCSRNSEEYE 180 GDHGGRPAEN KCHPSGTPLS AARDSPGFYF TWTAKCTTKS AIKRKEE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.007G035700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024461439.1 | 1e-148 | B3 domain-containing protein At4g01580 | ||||
TrEMBL | A0A3N7FCF0 | 1e-146 | A0A3N7FCF0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s11870.1 | 1e-169 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 | Representative plant | OGRP1718 | 5 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-16 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.007G035700.1 |
Entrez Gene | 7477988 |