PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.007G029500.1 | ||||||||
Common Name | POPTR_0007s12450g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 205aa MW: 23834.1 Da PI: 6.3098 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.6 | 5e-19 | 49 | 102 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++++eq++ Le F +++++ e++ +LA +lgL+ rqV vWFqNrRa++k+ Potri.007G029500.1 49 KRKLNEEQVNLLEMNFGNEHKLESERKDKLALELGLDPRQVAVWFQNRRARWKN 102 45899***********************************************95 PP | |||||||
2 | HD-ZIP_I/II | 117.6 | 7e-38 | 48 | 139 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kr+l++eqv+lLE++F +e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++++++ e+++Le+ev +L+e+l+ Potri.007G029500.1 48 RKRKLNEEQVNLLEMNFGNEHKLESERKDKLALELGLDPRQVAVWFQNRRARWKNKKLEEEYTKLKTSHENIVVEKCQLESEVLKLKEQLS 138 8****************************************************************************************98 PP HD-ZIP_I/II 93 e 93 e Potri.007G029500.1 139 E 139 6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.196 | 43 | 103 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-17 | 46 | 107 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.44E-17 | 47 | 110 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.62E-15 | 48 | 104 | No hit | No description |
Pfam | PF00046 | 2.9E-16 | 49 | 102 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-19 | 50 | 110 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.1E-5 | 74 | 83 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 78 | 101 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.1E-5 | 83 | 99 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 205 aa Download sequence Send to blast |
MSYKLEDHMA LTSQLYPGVF TQMVPQQGES KPRRRRKKNK DADLSGARKR KLNEEQVNLL 60 EMNFGNEHKL ESERKDKLAL ELGLDPRQVA VWFQNRRARW KNKKLEEEYT KLKTSHENIV 120 VEKCQLESEV LKLKEQLSEA EKEIQRLSDR IDGVSTNSPS SSLSMAMDPP FLGEFAMEGY 180 EDAAFYMPPE NNYIPGMEWI NLYM* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 33 | 50 | RRRKKNKDADLSGARKRK |
2 | 35 | 50 | RKKNKDADLSGARKRK |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pth.10478 | 0.0 | bud |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.007G029500.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002310795.2 | 1e-150 | homeobox-leucine zipper protein ATHB-40 | ||||
Swissprot | O23208 | 4e-77 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | A0A2K1ZNF3 | 1e-149 | A0A2K1ZNF3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s12450.1 | 1e-149 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4789 | 32 | 57 | Representative plant | OGRP3776 | 10 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36740.1 | 3e-69 | homeobox protein 40 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.007G029500.1 |
Entrez Gene | 7478017 |
Publications ? help Back to Top | |||
---|---|---|---|
|