PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G029400.3
Common NamePOPTR_0007s12460g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 355aa    MW: 37156.6 Da    PI: 5.7965
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G029400.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.65.8e-23255317163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+ +v++L++ N+ L++el++l++e+ klkse+
  Potri.007G029400.3 255 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVQNLSSDNSNLRNELQSLSEECNKLKSEN 317
                         89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.0E-31194IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165962.9E-6117225No hitNo description
Gene3DG3DSA:1.20.5.1702.4E-19249315No hitNo description
SMARTSM003382.3E-21255319IPR004827Basic-leucine zipper domain
PfamPF001701.5E-20255317IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.518257320IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.04E-11258315No hitNo description
CDDcd147023.67E-24260311No hitNo description
PROSITE patternPS000360262277IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010629Biological Processnegative regulation of gene expression
GO:0090342Biological Processregulation of cell aging
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MGTGEESTPA KPSKPTSSNQ EIPTTPLYPD WSSSMQAYYG AGATPPPFYA STVASPASHP  60
YLWGSQHPLI PPYGTPVPYP ALYPAGGVYA HPNMAPTPNS AQANIEMEGK VPNGKDRASA  120
KKTKGTSGGK AGESGKAASG SGNDGASQSA ESGSDGSSDA SDENTNQQEY GASKKGSFNQ  180
MLADANAQST SAGANIQASV PGKPVASMPA TNLNIGMDLW NASSAAGATK MRPNPSCATS  240
GVVPAGLPEQ WIQDERELKR QKRKQSNRES ARRSRLRKQA ECEELQARVQ NLSSDNSNLR  300
NELQSLSEEC NKLKSENDSI KEELTRLYGP EVVAKLEQSN PASVPESHGG EGDS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271277RRSRLRK
2271278RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.3130.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Found in both light and dark grown leaves.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00039PBMTransfer from AT4G36730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G029400.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1481920.0EF148192.1 Populus trichocarpa clone WS0128_J07 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024461332.10.0G-box-binding factor 1 isoform X2
SwissprotP427741e-124GBF1_ARATH; G-box-binding factor 1
TrEMBLA9PIG90.0A9PIG9_POPTR; Uncharacterized protein
STRINGPOPTR_0007s12460.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.11e-103G-box binding factor 1
Publications ? help Back to Top
  1. Ralph SG, et al.
    Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding.
    BMC Genomics, 2008. 9: p. 57
    [PMID:18230180]
  2. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  5. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  6. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  7. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]