PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G029200.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 607aa    MW: 68133.8 Da    PI: 7.1969
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G029200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS303.36e-932376052374
                GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         ++ L+++A+++++++l+laqa+L+rl+++ +sp g+p+qR+a++f+ AL++ la    ++  + +p   s++n +++++a+++f+ +sPi+
  Potri.007G029200.1 237 IQELIKAADCFDTNELQLAQAILERLNHRlQSPIGKPLQRAAFFFKDALQSLLAT--GSTRPQTNPVIPSWSNIVQTIKAYEAFFRISPIP 325
                         689*************************99************************9..4444455666666778****************** PP

                GRAS  92 kfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpeg.....ppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                          f+ +t+NqaIl++++g+   +H+iDfdi+ G ++++L+++L +++++     +p lRiT+v  +  +   e++ ++erL++fA+el++++
  Potri.007G029200.1 326 MFADFTTNQAILDSLNGNsVFLHVIDFDIGFGCHYASLMRELVDKADScnnltSPLLRITAVITE--DTVIETKLIKERLSQFAHELKIRL 414
                         ******************5667***********************955555669*********95..599999****************** PP

                GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyy 264
                         +++++  +++e+l+++++++  gE++aV l+  ++r l   +s+++  +++++ v+++sP vv+vv++e  ++  +++sF + f+++le+y
  Potri.007G029200.1 415 HIEFVPFRTFEMLSFKAIEFVDGEKTAVILSPIIFRRL---GSTNN-VTTFVNDVRRVSPSVVIVVDSEgwTESgTGSSFRRNFVDCLEFY 501
                         ****999******************************9...55555.667*******************554445677************* PP

                GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
                         s++fdsl+a + +  ++++k+E +ll+++i  +v   g++       +++Wre +  aG++pv+ls++a  qa++ll kv+++g+ v ++ 
  Potri.007G029200.1 502 SMMFDSLDAAAITGGDWARKIEIFLLKPKILAAVEGCGRR------VASRWREVFVGAGMRPVHLSQFADFQAESLLGKVQVRGFYVAKRL 586
                         *******99999999*******************999987......7899***************************************** PP

                GRAS 356 gslvlgWkdrpLvsvSaWr 374
                         ++lvl+WkdrpL+++SaW+
  Potri.007G029200.1 587 AELVLCWKDRPLIATSAWK 605
                         ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.242210585IPR005202Transcription factor GRAS
PfamPF035142.1E-90237605IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MFACGTFTFC SKVLEFCKYK QRTPSSLAIS HFLKHSKQAE KKKIEGVSST EGLLTFVLLA  60
MKVPVPSPQN SSCNNQSQNP KPVSCNNTNN NSRNIRINPN NQNLCYEPTS VLDLRRSPSP  120
ARAGKPAPAN DPIEWDDHVL QTLDWDSIMR DLDFHDDSAP ALIKNFPQFG PCSESQIQSH  180
NLPEFTASHQ MDATQFLHSD FNDMYINSIP THNLTSLDLS HSFHNNIGNW NAGFDFIQEL  240
IKAADCFDTN ELQLAQAILE RLNHRLQSPI GKPLQRAAFF FKDALQSLLA TGSTRPQTNP  300
VIPSWSNIVQ TIKAYEAFFR ISPIPMFADF TTNQAILDSL NGNSVFLHVI DFDIGFGCHY  360
ASLMRELVDK ADSCNNLTSP LLRITAVITE DTVIETKLIK ERLSQFAHEL KIRLHIEFVP  420
FRTFEMLSFK AIEFVDGEKT AVILSPIIFR RLGSTNNVTT FVNDVRRVSP SVVIVVDSEG  480
WTESGTGSSF RRNFVDCLEF YSMMFDSLDA AAITGGDWAR KIEIFLLKPK ILAAVEGCGR  540
RVASRWREVF VGAGMRPVHL SQFADFQAES LLGKVQVRGF YVAKRLAELV LCWKDRPLIA  600
TSAWKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-2327160537375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G029200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310797.10.0scarecrow-like protein 15
SwissprotO232101e-157SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A385JI670.0A0A385JI67_POPTO; GRAS family transcription factor
STRINGPOPTR_0007s12480.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Representative plantOGRP10323610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-143GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]