PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G017000.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 178aa    MW: 20797.8 Da    PI: 10.3093
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G017000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.22.1e-28959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        k+ien +nrqvt+skRrngi+KKA+EL vLCda+v++i+fs+t+kl ey+s
  Potri.007G017000.2  9 KKIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTNKLNEYIS 59
                        68***********************************************86 PP

2K-box75.61.3e-2571158188
               K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                         yq++ g +l+ +++e++q++l+kL++ +++L++e+R++ Ge+L++Ls+ +L+ Leq++ ++l+ +R +K++++++q e+ +kk  + +
  Potri.007G017000.2  71 YQNALGIDLWGTQYEKMQEHLRKLNDINHKLRQEIRQRRGEGLNDLSIDHLRGLEQHMTEALNGVRGRKYHVIKTQNETYRKKVSDEK 158
                         78888999***************************************************************************98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.553161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-40160IPR002100Transcription factor, MADS-box
CDDcd002653.52E-39280No hitNo description
SuperFamilySSF554553.53E-37294IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-27323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-273859IPR002100Transcription factor, MADS-box
PfamPF014862.3E-1682156IPR002487Transcription factor, K-box
PROSITE profilePS5129713.10584171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MGRGKIEIKK IENPTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMFSN TNKLNEYISP  60
STSTKKIYDQ YQNALGIDLW GTQYEKMQEH LRKLNDINHK LRQEIRQRRG EGLNDLSIDH  120
LRGLEQHMTE ALNGVRGRKY HVIKTQNETY RKKVSDEKNI LPLQFHACSF WNKFSGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-16171169MEF2C
5f28_B2e-16171169MEF2C
5f28_C2e-16171169MEF2C
5f28_D2e-16171169MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.119650.0bud| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed during flower development in stamens, petals and carpels (PubMed:17920788). Expressed in fruits and seeds (PubMed:17920788). {ECO:0000269|PubMed:17920788}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G017000.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0577081e-101AF057708.2 Populus balsamifera subsp. trichocarpa PTD protein (PTD) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024461070.11e-109floral homeotic protein DEFICIENS isoform X1
SwissprotQ003J21e-82TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLO652111e-108O65211_POPTR; PTD protein
STRINGPOPTR_0007s13660.11e-87(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.17e-61MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]