PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G017000.1
Common NamePTD
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 228aa    MW: 26393.9 Da    PI: 9.9994
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G017000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.63.3e-28959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        k+ien +nrqvt+skRrngi+KKA+EL vLCda+v++i+fs+t+kl ey+s
  Potri.007G017000.1  9 KKIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTNKLNEYIS 59
                        68***********************************************86 PP

2K-box836.6e-2871169199
               K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                         yq++ g +l+ +++e++q++l+kL++ +++L++e+R++ Ge+L++Ls+ +L+ Leq++ ++l+ +R +K++++++q e+ +kk k+l+e++
  Potri.007G017000.1  71 YQNALGIDLWGTQYEKMQEHLRKLNDINHKLRQEIRQRRGEGLNDLSIDHLRGLEQHMTEALNGVRGRKYHVIKTQNETYRKKVKNLEERH 161
                         78888999*********************************************************************************** PP

               K-box  92 kaLrkkle 99 
                          +L +++e
  Potri.007G017000.1 162 GNLLMEYE 169
                         ***98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.553161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-40160IPR002100Transcription factor, MADS-box
CDDcd002652.28E-39280No hitNo description
SuperFamilySSF554556.54E-37294IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-27323IPR002100Transcription factor, MADS-box
PfamPF003192.2E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-273859IPR002100Transcription factor, MADS-box
PfamPF014865.6E-1882166IPR002487Transcription factor, K-box
PROSITE profilePS5129714.61684174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MGRGKIEIKK IENPTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMFSN TNKLNEYISP  60
STSTKKIYDQ YQNALGIDLW GTQYEKMQEH LRKLNDINHK LRQEIRQRRG EGLNDLSIDH  120
LRGLEQHMTE ALNGVRGRKY HVIKTQNETY RKKVKNLEER HGNLLMEYEA KLEDRQYGLV  180
DNEAAVALAN GASNLYAFRL HHGHNHHHHL PNLHLGDGFG AHELRLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-16171169MEF2C
5f28_B2e-16171169MEF2C
5f28_C2e-16171169MEF2C
5f28_D2e-16171169MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.119650.0bud| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed during flower development in stamens, petals and carpels (PubMed:17920788). Expressed in fruits and seeds (PubMed:17920788). {ECO:0000269|PubMed:17920788}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G017000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0577081e-100AF057708.2 Populus balsamifera subsp. trichocarpa PTD protein (PTD) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024461070.11e-168floral homeotic protein DEFICIENS isoform X1
SwissprotQ003J21e-116TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLO652111e-166O65211_POPTR; PTD protein
STRINGVIT_04s0023g02820.t011e-113(Vitis vinifera)
STRINGPOPTR_0005s12000.11e-114(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Representative plantOGRP51991121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.15e-69MIKC_MADS family protein
Publications ? help Back to Top
  1. Sheppard LA, et al.
    A DEFICIENS homolog from the dioecious tree black cottonwood is expressed in female and male floral meristems of the two-whorled, unisexual flowers.
    Plant Physiol., 2000. 124(2): p. 627-40
    [PMID:11027713]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]