PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G015200.3
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family DBB
Protein Properties Length: 146aa    MW: 16441.1 Da    PI: 8.4398
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G015200.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.16.6e-07433534
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                         C+ +e+  ++ fC  ++  lC  C ++ H
  Potri.007G015200.3  4 LCDACESAAAIVFCAADEAALCLACDEKVH 33
                        7**************************998 PP
2zf-B_box33.86.8e-115291237
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                        + ++C+ +e+ ++ ++Ce++++ lC +C ++ H g    H
  Potri.007G015200.3 52 DVPRCDICENAPAFFYCETDGSSLCLQCDMTVHVGgkrtH 91
                        6799*****************************6655556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003369.4E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.068147IPR000315B-box-type zinc finger
PfamPF006432.2E-5342IPR000315B-box-type zinc finger
CDDcd000215.49E-5345No hitNo description
SuperFamilySSF578451.03E-54887No hitNo description
PROSITE profilePS501199.3145196IPR000315B-box-type zinc finger
SMARTSM003367.6E-125196IPR000315B-box-type zinc finger
PfamPF006431.1E-85291IPR000315B-box-type zinc finger
CDDcd000219.63E-75484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005634Cellular Componentnucleus
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MRTLCDACES AAAIVFCAAD EAALCLACDE KVHMCNKLAS RHVRVGLANP SDVPRCDICE  60
NAPAFFYCET DGSSLCLQCD MTVHVGGKRT HGRYLLLRQR VEGRQGKDRI SHQRQQQKRS  120
DRIARFLQLQ CHSLILMDMT KWIKR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.90801e-173bud
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G015200.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1465971e-116EF146597.1 Populus trichocarpa clone WS01210_C06 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310844.15e-71B-box zinc finger protein 18
SwissprotC0SVM55e-63BBX19_ARATH; B-box zinc finger protein 19
TrEMBLB9HFI71e-69B9HFI7_POPTR; Uncharacterized protein
STRINGPOPTR_0007s13830.12e-70(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.15e-54DBB family protein