PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G011600.2
Common NamePOPTR_0007s14210g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 504aa    MW: 55227.5 Da    PI: 6.3052
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G011600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.62.3e-11219275155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +       rk  + g ++ +e+Aa+a++ a++k++g
  Potri.007G011600.2 219 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEEKAARAYDLAALKYWG 275
                         57*******************4444.2344336655.779999**************98 PP
2AP250.26.4e-16318369155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Potri.007G011600.2 318 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 369
                         57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.8E-9219275IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-14219285IPR016177DNA-binding domain
CDDcd000186.31E-18219285No hitNo description
SMARTSM003801.4E-20220289IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-11220284IPR001471AP2/ERF domain
PROSITE profilePS5103216.766220283IPR001471AP2/ERF domain
PRINTSPR003673.3E-6221232IPR001471AP2/ERF domain
PfamPF008472.8E-10318369IPR001471AP2/ERF domain
CDDcd000181.22E-11318377No hitNo description
SuperFamilySSF541717.19E-18318378IPR016177DNA-binding domain
SMARTSM003808.8E-31319383IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-18319377IPR001471AP2/ERF domain
PROSITE profilePS5103219.177319377IPR001471AP2/ERF domain
PRINTSPR003673.3E-6359379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MAPATNWLSF SLSPMEMLRS SESQFMSYES SSSASPHYLF DNFYADGWAH PKESQVTTTT  60
MAENSNILTS FIGPETPHQQ VPKLEDFLGD SSSSINVRYS DNSQTETQDS SLTHIYDHQG  120
SAAAYFNEQQ DLKAIAGFQA FSTNSGSEVD DSASIAPTQV GGIESTGNEL GFSNNAALSL  180
GVNNDTSNNQ GGSTEKLAIV SADNDCSKKI ADTFGQRTSI YRGVTRHRWT GRYEAHLWDN  240
SCRREGQARK GRQGGYDKEE KAARAYDLAA LKYWGPTATT NCPVSNYTKE LEDMEYVSKQ  300
EFIASLRRKS SGFSRGASIY RGVTRHHQQG RWQARIGRVA GNKDLYLGTF ATEEEAAEAY  360
DIAAIKFRGL NAVTNFEMNR YNVEAIMKSA LPVGGAAKRL KTSLDAEHKP NVSDNHQPQP  420
RCNSYSTNNN ISFAAVQPAS TAVPCGITFD ASTALYHHNL VHHLQTTNNF AATDSSGSTS  480
SMATAMTTLP QTAEYFTWPH QTY*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in inflorescence and youg floral mersitems, and in stem procambial cells. In floral mersitems, mostly expressed in the central dome. Disappears progressively from sepal primordia, but accumulates in second, third and fourth whorl organ primordia. Later, confined to occasional patches in stamens and in petal before disparearing progressively from flowers. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, hypocotyl, inflorescence, siliques, and pistils. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:16307362}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G011600.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460943.10.0AP2-like ethylene-responsive transcription factor AIL6
RefseqXP_024460944.10.0AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A3N7F9030.0A0A3N7F903_POPTR; Uncharacterized protein
STRINGPOPTR_0007s14210.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-180AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]