PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.007G011600.1 | ||||||||
Common Name | POPTR_0007s14210g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | AP2 | ||||||||
Protein Properties | Length: 507aa MW: 55602.9 Da PI: 6.3051 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.5 | 4.3e-15 | 219 | 278 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g Potri.007G011600.1 219 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARAYDLAALKYWG 278 57*******************666664478446*************************98 PP | |||||||
2 | AP2 | 50.2 | 6.5e-16 | 321 | 372 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Potri.007G011600.1 321 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 372 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.09E-16 | 219 | 288 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.77E-21 | 219 | 288 | No hit | No description |
Pfam | PF00847 | 6.8E-12 | 219 | 278 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.558 | 220 | 286 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.1E-15 | 220 | 287 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-27 | 220 | 292 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-6 | 221 | 232 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-18 | 321 | 381 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.16E-11 | 321 | 380 | No hit | No description |
Pfam | PF00847 | 2.8E-10 | 321 | 372 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.177 | 322 | 380 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-18 | 322 | 380 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.8E-31 | 322 | 386 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-6 | 362 | 382 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010080 | Biological Process | regulation of floral meristem growth | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0035265 | Biological Process | organ growth | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 507 aa Download sequence Send to blast |
MAPATNWLSF SLSPMEMLRS SESQFMSYES SSSASPHYLF DNFYADGWAH PKESQVTTTT 60 MAENSNILTS FIGPETPHQQ VPKLEDFLGD SSSSINVRYS DNSQTETQDS SLTHIYDHQG 120 SAAAYFNEQQ DLKAIAGFQA FSTNSGSEVD DSASIAPTQV GGIESTGNEL GFSNNAALSL 180 GVNNDTSNNQ GGSTEKLAIV SADNDCSKKI ADTFGQRTSI YRGVTRHRWT GRYEAHLWDN 240 SCRREGQARK GRQVYLGGYD KEEKAARAYD LAALKYWGPT ATTNCPVSNY TKELEDMEYV 300 SKQEFIASLR RKSSGFSRGA SIYRGVTRHH QQGRWQARIG RVAGNKDLYL GTFATEEEAA 360 EAYDIAAIKF RGLNAVTNFE MNRYNVEAIM KSALPVGGAA KRLKTSLDAE HKPNVSDNHQ 420 PQPRCNSYST NNNISFAAVQ PASTAVPCGI TFDASTALYH HNLVHHLQTT NNFAATDSSG 480 STSSMATAMT TLPQTAEYFT WPHQTY* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detected in inflorescence and youg floral mersitems, and in stem procambial cells. In floral mersitems, mostly expressed in the central dome. Disappears progressively from sepal primordia, but accumulates in second, third and fourth whorl organ primordia. Later, confined to occasional patches in stamens and in petal before disparearing progressively from flowers. {ECO:0000269|PubMed:15988559}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, seedlings, hypocotyl, inflorescence, siliques, and pistils. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:16307362}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00504 | DAP | Transfer from AT5G10510 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.007G011600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024460943.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL6 | ||||
Refseq | XP_024460944.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL6 | ||||
Swissprot | Q52QU2 | 0.0 | AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6 | ||||
TrEMBL | A0A3N7F903 | 0.0 | A0A3N7F903_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s14210.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4810 | 31 | 49 | Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10510.2 | 1e-178 | AINTEGUMENTA-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Potri.007G011600.1 |
Entrez Gene | 7495544 |
Publications ? help Back to Top | |||
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