PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G005000.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 336aa    MW: 36501.3 Da    PI: 10.7247
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G005000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.64.4e-11555146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                        +++WT eE+  l+ +v ++G+g W+tI            R+  ++k++w++
  Potri.007G005000.1  5 KQKWTSEEEAALKAGVLKHGTGKWRTILMDPEfsavlRLRSNVDLKDKWRN 55
                        79***********************************99***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.879161IPR017930Myb domain
SuperFamilySSF466891.17E-14265IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-12456IPR009057Homeodomain-like
SMARTSM007171.1E-5459IPR001005SANT/Myb domain
PfamPF002494.1E-7555IPR001005SANT/Myb domain
CDDcd116602.64E-17657No hitNo description
SMARTSM005261.5E-10116182IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150419.976119187IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467854.35E-15122196IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.7E-13123189IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005389.8E-9124180IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0031627Biological Processtelomeric loop formation
GO:0000784Cellular Componentnuclear chromosome, telomeric region
GO:0000786Cellular Componentnucleosome
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MGAPKQKWTS EEEAALKAGV LKHGTGKWRT ILMDPEFSAV LRLRSNVDLK DKWRNINVTA  60
IWGSRKKAKI TLKRRPLTPK REENAKALST VVQTNEEVVD AKPLAFASGT PGNGGPKDLL  120
ARLDNLILEA ITTLKEPTGS DRASIALYIQ EKYWAPMNLR KLLGGKLKHL TANGNLIMVQ  180
HKYRIAPSST FSEGRKNHAL PEGKRKDALK LEKSKNKILT KAHIDRDLSK IQGMTALEAA  240
AAAAKAVAEA ESAIADAEAA AREAEKAEAE AEAAQVFAKA AIKAFKLRAC HTCFMVRKTL  300
SLPPGFNSMA SKGVQGARDC HLAKQKKRAS QGQLS*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15060584}.
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G005000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1484590.0EF148459.1 Populus trichocarpa x Populus deltoides clone WS01315_H07 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024461393.10.0telomere repeat-binding factor 2 isoform X2
SwissprotQ9FJW59e-74TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLA0A2K1ZLX50.0A0A2K1ZLX5_POPTR; Uncharacterized protein
STRINGPOPTR_0007s14920.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Representative plantOGRP8551659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.23e-68MYB_related family protein
Publications ? help Back to Top
  1. Lee WK,Cho MH
    Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.
    Nucleic Acids Res., 2016. 44(10): p. 4610-24
    [PMID:26857545]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]