PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G003200.7
Common NamePOPTR_0007s15110g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family G2-like
Protein Properties Length: 484aa    MW: 52901 Da    PI: 6.2712
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G003200.7genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.31.7e-33264318155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         kpr+rWtpeLHerFveav++L G+ekAtPk +l+lm+vkgLt++hvkSHLQkYRl
  Potri.007G003200.7 264 KPRMRWTPELHERFVEAVNKLDGAEKATPKGVLKLMNVKGLTIYHVKSHLQKYRL 318
                         79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.005261321IPR017930Myb domain
SuperFamilySSF466891.65E-18262318IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-32263319IPR009057Homeodomain-like
TIGRFAMsTIGR015574.2E-25264319IPR006447Myb domain, plants
PfamPF002491.4E-9266317IPR001005SANT/Myb domain
PfamPF143792.7E-22354399IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MNQHAVVSVT KSETSKGVTQ PFCTTLFPIQ NSSSSKSDCQ TSLTGESSSP RPSPLIRTES  60
LGSPSKMQLS TAQHQMCCLK FGPDSPLSPT SHVQSSKSTF QRSSVFCTSL YLSSSSISET  120
NRQLGNLPFL PHPPTYSHSV SATDSTKSPL LFSEDLSNQC DEEHSDAFMK DFLNLSGNAS  180
EGSFHGMNYT GGNLELTEQL ELQFLSDELE IAITDHGENP GLDEIYGTHE TSSKPATGFA  240
CNQDSPSVDA LSSHPSPGSS TAHKPRMRWT PELHERFVEA VNKLDGAEKA TPKGVLKLMN  300
VKGLTIYHVK SHLQKYRLAK YLPEKKEEKK ASCSEEKKVA SINIDGDVKK KGTIQITEAL  360
RMQMEVQKQL HEQLEVQRTL QLRIEEHARY LQKIIEQQNA GSALLSPKSL SASTNPPKDS  420
ELPPPSPSAV AESKTDLSSP LPSSKHKAAD SDNFEKQTSE KRIRLEEKSE SASEDAVVED  480
PPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-26264321259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-26264321259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-26264321259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-26264321259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-26264321259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-26264321259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-26264321259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-26264321259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G003200.7
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310903.30.0myb family transcription factor PHL6
RefseqXP_024461415.10.0myb family transcription factor PHL6
SwissprotQ949U21e-137PHL6_ARATH; Myb family transcription factor PHL6
TrEMBLA0A2K1ZLT00.0A0A2K1ZLT0_POPTR; Uncharacterized protein
STRINGPOPTR_0007s15110.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.21e-110G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]