PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G264000.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 478aa    MW: 52500.9 Da    PI: 8.4033
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G264000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.22.6e-26128185259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          DgynWrKYGqK+vkgs+++rsYYrC + +C +kkkv+++ + ++vv+++Y g+Hnh+
  Potri.006G264000.1 128 ADGYNWRKYGQKPVKGSKNSRSYYRCVHCSCYAKKKVQHCCQSGRVVDVVYIGDHNHD 185
                         6********************************************************7 PP
2WRKY94.95.8e-30330386258
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                         +Dgy+WrKYGqK+ kg+ f rsYYrCts+ Cp++k+ver+a++ + ++itYeg+H+h
  Potri.006G264000.1 330 NDGYRWRKYGQKMLKGNSFIRSYYRCTSSACPARKHVERAADEATSTTITYEGKHDH 386
                         8******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.2E-25122187IPR003657WRKY domain
SuperFamilySSF1182906.15E-23125187IPR003657WRKY domain
SMARTSM007744.8E-26127186IPR003657WRKY domain
PfamPF031061.9E-20129185IPR003657WRKY domain
PROSITE profilePS5081122.894129187IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.2E-30314389IPR003657WRKY domain
SuperFamilySSF1182904.18E-25322389IPR003657WRKY domain
PROSITE profilePS5081128.116324389IPR003657WRKY domain
SMARTSM007744.6E-33329388IPR003657WRKY domain
PfamPF031066.0E-24330386IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MQEQRKYHRG DSDIGFKNYD CSSFSQLLKK VMTSSNSPGF QGENEMFQRD AQVGTKPEAD  60
WVRLEHQVEC ANTSSEALSV IPAAISVPHS ASVTQKPMSK CELGLVIDQQ NSHHETGLPR  120
VVMDAPFADG YNWRKYGQKP VKGSKNSRSY YRCVHCSCYA KKKVQHCCQS GRVVDVVYIG  180
DHNHDPPHRK CIRVISSAKP TVGSQIVDPS VQKLDGSDIS VCSADGRRSS LHVPESEQQS  240
SSSSNGNVGA KIEEKNGDEP ESKRCFGPRA VEPQQNGPCG IAGTEVQEKH GAEPRLKIRI  300
KERSAAHSVP VLKKEPEIAV HTVPDEGSSN DGYRWRKYGQ KMLKGNSFIR SYYRCTSSAC  360
PARKHVERAA DEATSTTITY EGKHDHGMPA PKKRHEHDIP VPKKRHGSES CLISPAASAD  420
NACCKKNRSL SSRRPSSKCS MDSEVDIMGE KILELGGEEA LESAQTLLSI GVELKPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-22318389374WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G264000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774350.0GQ377435.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006382109.20.0probable WRKY transcription factor 32 isoform X1
TrEMBLA0A2K2A8P90.0A0A2K2A8P9_POPTR; Uncharacterized protein
STRINGXP_002515427.11e-117(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16159610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.18e-49WRKY DNA-binding protein 32