PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G259400.3
Common NamePOPTR_0006s27560g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 425aa    MW: 47412.7 Da    PI: 6.4697
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G259400.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.49.9e-083694022154
                         HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         k +yp++e++++L +++gL+ +q+ +WF N+R +
  Potri.006G259400.3 369 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 402
                         469*****************************87 PP
2ELK28.82.8e-10323344122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELKh+L+++Y+++++++++E++
  Potri.006G259400.3 323 ELKHELKQGYKEKIVDIREEIL 344
                         9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-19156200IPR005540KNOX1
PfamPF037903.8E-17158199IPR005540KNOX1
SMARTSM012563.7E-28211266IPR005541KNOX2
PfamPF037917.2E-20217265IPR005541KNOX2
SMARTSM011886.1E-4323344IPR005539ELK domain
PfamPF037899.9E-7323344IPR005539ELK domain
PROSITE profilePS512139.969323343IPR005539ELK domain
PROSITE profilePS5007111.726343406IPR001356Homeobox domain
SMARTSM003894.7E-11345410IPR001356Homeobox domain
SuperFamilySSF466895.13E-16345409IPR009057Homeodomain-like
CDDcd000867.24E-12346407No hitNo description
Gene3DG3DSA:1.10.10.604.4E-25350407IPR009057Homeodomain-like
PfamPF059201.2E-17363402IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MAFHHNLPSQ DLPLHHFTDQ QATENTTAPP NWLNTALLRS QQPPQQRTHH HFTDNNNTNN  60
FLNLHSATPS TTATTSDSAS HNPTQWLSRS SSSLLNRNHS TVIDDVSAAA AGGDHPIIAS  120
MSQESSELKS MNKSEGETMV ESGGGGGEAV VNWQNAKCKA DILAHPLYDQ LLSAHVACLR  180
IATPVDQLPR IDAQLAQSQQ VVAKYSALGS HQGLVPDDKE LDQFMTHYFL LLCSFKEQLQ  240
QHVRVHAMEA VMACWEIEQS LQSLTGVSPG EGTGATMSDD DEDQVDSEAN MFDGSLEGVD  300
TMGFGPLVPT ESERSLMERV RQELKHELKQ GYKEKIVDIR EEILRKRRAG KLPGDTTSVL  360
KAWWQSHSKW PYPTEEDKAR LVQETGLQLK QINNWFINQR KRNWHSNPST STVLKSKRKS  420
HYRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1416420KRKSH
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G259400.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7700200.0KP770020.1 Populus tomentosa TALE transcription factor (Potri.006G259400) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024459661.10.0homeobox protein knotted-1-like 3 isoform X2
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A2K2A8I30.0A0A2K2A8I3_POPTR; Uncharacterized protein
STRINGPOPTR_0018s02210.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.10.0KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]