PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G258500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 332aa MW: 35817.3 Da PI: 4.1034 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 45.7 | 8.4e-15 | 15 | 60 | 6 | 49 |
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-..TTSEEEEE CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifs..stgklyey 49 +r+vtf+kRr+g++ KA L+ Cda++a+++ s s+ k+y++ Potri.006G258500.1 15 AEQRSVTFTKRRQGLFNKAADLCRICDAQIAIMVSStgSKEKVYTF 60 568****************************999652278899998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.9E-18 | 1 | 63 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 15.657 | 2 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-9 | 4 | 24 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.22E-18 | 5 | 77 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.8E-14 | 15 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-9 | 24 | 39 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-9 | 39 | 60 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MGRTRKIPMA KRETAEQRSV TFTKRRQGLF NKAADLCRIC DAQIAIMVSS TGSKEKVYTF 60 GHSSVDAVFD RFLDNFTAAP EAVAYEAGIK SASNSLYEEI KALEGDVNTL MQNKKRNVGG 120 VLWDALEEIE QSNTSVEELH DVVDILESLL GQAKNKLMNN ATANLGVRIA VEPKSDNFLA 180 LEPKPRDDSL SSLGGDQVGQ NSAIVGDNGA NYSDSYWNAD GSTTDSCMDF PVEVDVDLIW 240 NLLESSDFSS GSDKVISMSN SSDCTLSGTG SESASGSQEN EDNVFPATNL DSELFKDMEL 300 VDCGTYNTTP DPGSGDIDQH YAMDGDCNAK Q* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G258500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024459550.1 | 0.0 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2K2A8H0 | 0.0 | A0A2K2A8H0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s11190.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14582 | 7 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 5e-19 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G258500.1 |